Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0781 ATGTCAACACTAGAGAGGATACTCAGGCTTATTGACTTGTCACCAGTGGGATCCGGATTTCGTCCCACCGATGAAGAACTGGTTGATCTGTATTTGAAGTCAAAGATACAGGGCACGGCATTCCACGAAGACATCATCCCTGAGGTTGATGCCTACATATTGGATCCTTGGTTTATACCAGGTAAAACTGAATCATCTAGATTGTTGTTTTCTTCTTTCAATCGTACAAACAAATGGTCCGGACTGGTTCTTCTTCTCTCATCTTTATAA 270 0.4185 MSTLERILRLIDLSPVGSGFRPTDEELVDLYLKSKIQGTAFHEDIIPEVDAYILDPWFIPGKTESSRLLFSSFNRTNKWSGLVLLLSSL* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0781 89 SUPERFAMILY NAC domain 14 65 IPR036093 GO:0003677|GO:0006355
Vvi15g0781 89 Gene3D NAC domain 23 81 IPR036093 GO:0003677|GO:0006355
Vvi15g0781 89 ProSiteProfiles NAC domain profile. 14 89 IPR003441 GO:0003677|GO:0006355
Vvi15g0781 89 Pfam No apical meristem (NAM) protein 15 71 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0781 Vvi-Chr15 16489962 16490323 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0781 15 63 NAC Transcription Factor Family AT5G17260 55.102 6.35e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0781 NAM 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0781 - - vri:117931638 115.546