Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0780 ATGTCTGTAGGAGAGATCATAAGCAGGTATTTGAAATCGTTCCCAATGGGATTCGGATTTCATCCCACCGATGAACAGTTGGTTGTTCGCTATTTGATCCCCAAGTTACGGGACGAGCATTCCCGTTTGAAGATGAAGATGCCAGGCACTGATTTCCAGGTAGACATCATCCGCGAGGTTGATGTCTGCCAATGGGAGCCTTGGGAATTACCAGATGAACTGAATCATCCAGTTTTTTCAGTGTTTCAAACAGATGATCCAGAGTGGTTCTTTTTCTCTCCCCTTCATAAGAAAAATGGCAGTCAATTCAAAAGGGCAACAAATAAGGGGTTCTGGAAATCCACCGGTCCGGATCGTAAAATCAAGCATCGGGCCACAGGAAAGGATATTGGTACCAAGAAAACTTTGGTTTTCCATGAAGGCCGTGGTCCTTCGGCCGTCAGTGCCGGCTGGATTATCCATGAGTACCACGCAGATAAGAAATTTGTTCGCGACGATGAGACCTATGTTCTGTGTCGCTTAAAGAGAGAAACAGGGTCTGGTTTTCCTCCACAAACCAACCTTAATGGCATGTTACCCAATCCGCCATCCAATCAACAAACTTCGCGGATGAATATGGACGTTGACGATTCATCTACAGGTACTGGGATTCATCTGAATCGCCCACCCAACAGCATGACCTCAGGTGCTGATTGGAGCCACTATGCTATCAATATTGCTTGTGATGATCTTGCTATTGATTCGGACGGATTCCCTTATGACAGGAGATCAGCTGTTGACAGTGGGAACCTGGGGAATTGTCGTATTGGCAGGCTATTGACCTGCCCACAGACCCCATTGAAGGGCGCACATGGTAAGGGTGGTGGATCAAGCAGTGACACAGACACTCAAGTGGCCCAAGTTGAGGCAAAAATATGCAATGGAAAGGGTTCTTTCAATTTCCCAGACACTGCTTCTGCAGTCCATGAACCAAGTTCCCCACCAGGTTATCTTGTCAATTTACTCGTGGGCATACTATTGTTGGTGATTCTTATTGCAGTTATGGTGCAAGACATCCGTGCAAAGTTTTAG 1071 0.4641 MSVGEIISRYLKSFPMGFGFHPTDEQLVVRYLIPKLRDEHSRLKMKMPGTDFQVDIIREVDVCQWEPWELPDELNHPVFSVFQTDDPEWFFFSPLHKKNGSQFKRATNKGFWKSTGPDRKIKHRATGKDIGTKKTLVFHEGRGPSAVSAGWIIHEYHADKKFVRDDETYVLCRLKRETGSGFPPQTNLNGMLPNPPSNQQTSRMNMDVDDSSTGTGIHLNRPPNSMTSGADWSHYAINIACDDLAIDSDGFPYDRRSAVDSGNLGNCRIGRLLTCPQTPLKGAHGKGGGSSSDTDTQVAQVEAKICNGKGSFNFPDTASAVHEPSSPPGYLVNLLVGILLLVILIAVMVQDIRAKF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0780 356 Gene3D NAC domain 23 180 IPR036093 GO:0003677|GO:0006355
Vvi15g0780 356 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 15 201 - -
Vvi15g0780 356 SUPERFAMILY NAC domain 10 176 IPR036093 GO:0003677|GO:0006355
Vvi15g0780 356 Pfam No apical meristem (NAM) protein 15 157 IPR003441 GO:0003677|GO:0006355
Vvi15g0780 356 ProSiteProfiles NAC domain profile. 14 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0780 Vvi-Chr15 16483702 16485253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0780 5 190 NAC Transcription Factor Family AT5G24590 44.271 5.69e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0780 NAM 9.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0780 - - vvi:100262563 514.998