Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0779 ATGTCAGTAGGAGAGACCATAGGTGCGATTTTGGAAACTTTACCAGCGGGATTCAGATTTCATCCCACCGATGAAGAACTGGTTGATCACCATTTGAAGCCGAAGATACTGGGCATGGATTCCCAAGTAGAAATCATCCCTGAGGTTGATATCTGCAAATGGGAGCCGTGGGAATTACCAGGTTCTTCAGTGATAAAAACAGATGATCCAGAGTGGTTCTTCTTCAGTCTTCTTGATTACAAGTATTCAAAAGGCAGTCGTTCCAACAGGAAAACAAAGGCTGGCTACTGGAAACCCACCGGTAAGGATCGTGACATCTTGTCTGGGACCAACAAAGAGGTGATCGGTGCCAAGAAAACTTTGGTTTTCTATATAGGCCGTTGTCATGCTGCCACCAGGACCAACTGGGTTATCCACGAGTATCGTGCAGATATTGCGGGCCTTCCTGCCAAAGAGGATTCTCAGCTACAAGGTTTATTAAATGATTTCACATCTACTCCACCGAGTTCTGATTGGTTCTCTGACACAGAGCAAGGACTTGACTGGGATCTCCCATCTCCCAGTGGCTTTAACAATATCTATGGAAGTATGCAGTTTCAGGATGGGTTTGATACAGCAGAATTCGTGGTTGATCCGGATGAATACCATTGTGAAGGATTAACAGGTCAGGGGAGCCCAGCTGTTGATGGTCGGAACCTGAACAATGGTTCTGCTGGCAGGCTATCAGCCGGCCCACAGAGCCCACAGAAGGGAGTGTATGGTAAGGACGGTGGATCAAGCAGTAACACTGACACTGCAGTGCTCCAAGGTTCCTGTTTGCAGGCCAAAGACAGGGCAGAATATGGTTCTGTTATTGATCTGCTCCAGAACAAAAACCCCATCAGAGAGTTCAACAGAGACTCCAAAGTTACTGAAAAAGCAAATCGAAAGCGGAGTTCAATATGGAATGAGCCAGTCGGAATGAATAAAAAGGGTTCCTTCAGTTCCCCAGAGACAGCTTCTGCAAGCCATGAGCCAAGTTCCTCACCAGGTACCGACCAGCCATTCATAACCAAAAAAATTCATACAGTGAAGAAGCATCAAGAAAGAGAAGCATGTGTGTTTTTTTAG 1110 0.4613 MSVGETIGAILETLPAGFRFHPTDEELVDHHLKPKILGMDSQVEIIPEVDICKWEPWELPGSSVIKTDDPEWFFFSLLDYKYSKGSRSNRKTKAGYWKPTGKDRDILSGTNKEVIGAKKTLVFYIGRCHAATRTNWVIHEYRADIAGLPAKEDSQLQGLLNDFTSTPPSSDWFSDTEQGLDWDLPSPSGFNNIYGSMQFQDGFDTAEFVVDPDEYHCEGLTGQGSPAVDGRNLNNGSAGRLSAGPQSPQKGVYGKDGGSSSNTDTAVLQGSCLQAKDRAEYGSVIDLLQNKNPIREFNRDSKVTEKANRKRSSIWNEPVGMNKKGSFSSPETASASHEPSSSPGTDQPFITKKIHTVKKHQEREACVFF* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0779 369 MobiDBLite consensus disorder prediction 299 350 - -
Vvi15g0779 369 MobiDBLite consensus disorder prediction 322 349 - -
Vvi15g0779 369 MobiDBLite consensus disorder prediction 227 244 - -
Vvi15g0779 369 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Vvi15g0779 369 SUPERFAMILY NAC domain 10 146 IPR036093 GO:0003677|GO:0006355
Vvi15g0779 369 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vvi15g0779 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 162 - -
Vvi15g0779 369 MobiDBLite consensus disorder prediction 219 265 - -
Vvi15g0779 369 Pfam No apical meristem (NAM) protein 15 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0779 Vvi-Chr15 16477881 16480899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0779 7 148 NAC Transcription Factor Family AT4G35580 61.538 7.64e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0779 NAM 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0779 - - vvi:104881858 399.053