Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0778 ATGCCCATTTCCAAGCTTCTTCCAAAGTGTCTAGTCCGAATTCTCTTTCTCTCTATATATATACACACCCACAAATGGGAGAGGCACGTAGTACTCCTATGCTATATTATATTGACAGTTTTATTCAGTTCCACCATTGAGTTTCTTCTTCTTCTTCATCCTAGTAATAATAGTAGTAGTGTTTGTTTATTTGATTCCCAAGTGTTAAGTATGTCAGGAGGAGGAATGATAGGCAGGGATTTGGAAACTTTACCGGTGGGGTTCAGATTTGCTCCCACCGATGAAGAACTGGTTGATAAATATTTGACGTGGAAGATACTGGGCATGGATTCCGAGGTAGAGATCATCCCCGAGGTTGATGTCTGCAAATGGGAGCCTTGGGAAATACCAGGCTTTTCAGTGATAAAAACAGACGATCCAGAGTGGTTCTTCTTCAGTCTTCTTGATTACAAGTATTCAAATGGCAGTCGTTCCAACAGGGCAACAAATGCTGGCTACTGGAAACCCACTGGTCAGGATCGTGGCATCTTCTCTGGCACCAACAAAGAGGTGATTGGTACCAAGAAAACTTTGGTTTTCTATAGAGGCCGTGGTCGTGGTGCCATCAGGACCAACTGGGTTATCCACGAGTATCACACAAATATTGCCAGCCTTCCTGCAAATGTATGCTACATTACCTCCATTATCCTGCTCTTACTCTGTTTTTTTTCTTATCAACACTGTTTGGTTGACACAAAAAGGAAAGTAAATCACTGA 756 0.422 MPISKLLPKCLVRILFLSIYIHTHKWERHVVLLCYIILTVLFSSTIEFLLLLHPSNNSSSVCLFDSQVLSMSGGGMIGRDLETLPVGFRFAPTDEELVDKYLTWKILGMDSEVEIIPEVDVCKWEPWEIPGFSVIKTDDPEWFFFSLLDYKYSNGSRSNRATNAGYWKPTGQDRGIFSGTNKEVIGTKKTLVFYRGRGRGAIRTNWVIHEYHTNIASLPANVCYITSIILLLLCFFSYQHCLVDTKRKVNH* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0778 251 Gene3D NAC domain 93 226 IPR036093 GO:0003677|GO:0006355
Vvi15g0778 251 SUPERFAMILY NAC domain 76 217 IPR036093 GO:0003677|GO:0006355
Vvi15g0778 251 Pfam No apical meristem (NAM) protein 85 212 IPR003441 GO:0003677|GO:0006355
Vvi15g0778 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 83 213 - -
Vvi15g0778 251 ProSiteProfiles NAC domain profile. 84 228 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0778 Vvi-Chr15 16470833 16471664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0778 81 233 NAC Transcription Factor Family AT4G35580 58.170 1.08e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0778 NAM 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0778 - - vvi:104881857 459.529