Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0777 ATGTCAGTAGGAGAGACCATAGGTGCGATTTTGGAAACTTTACCAGTGGGATTCAGATTTCATCCCACCGATGAAGAACTGGTTGATCGCCATTTGAAGCCAAAGATACTGGGCATGGATTCCCAAGTAGAAATCATCCCTGAGGTTGATATCTGCAAATGGGAGCCGTGGGAATTACCAGGTTTTTCAGTGTTGCAAACAGATGATCTAGAGTGGTTCTTTTTCTCTCCTCTTCATAAGAAGTACCAAAATGGCAGTCAATTCAAAAGGGCAACAAAGGCTGGCTACTGGAAACCCACCGGTTTGGGTCGTGACATCTTGTCTCGGACCAACAAAGAGGTGATTGGTACCAGGAAAACTCTGAATTTCTACGAAGGCCGTGGTCGTGCTGCTGTGTTGACCAATTGGGTTATCTACCAGTATCAGTATCATCGCTCAGATATTGCCTCCCTTCCTTCCAAGAGGGCCTATGTTCTGTGTCGCTTAAAGAGAAAAAAAGATAAGAAGACAGGGTCCTATATACCAACCCCTGATGAAGCTGTTGCAGGTACTGGGATTCATCTGAATGGCCCGGCCAACAACATGACCTTAGATGCAGGGCCGAGCCACCATTTTAGCGATATTGCTTCTGATATTCGAAATTATCAAGTAGAGGAAATGACTTCAGATGAGGATCCTCAGCTACCAGGTTTATTAAATGACATCCCATTTACTCCACTGGATTCTGATTGGTTCTCTGACACAGAGCAAGGACTTGACTTGGATCTCCCATCTCCCAGTGGCTTTAACAATAGCTATGGAAATATGCAGTTTGAGGATGGGGTTGATACAGAATTTGCAGATAGTCTTATTGTTGATCCAGATGAATACCATTGTGAAGGATTAACTGGTCAGAGGATCTCAGCTGTTGACAGTTGGAACCTAAACCATGGTTTTGTTGGCAGGCTATCAGCCCGCCCACAGAGCCCATTGAAGGGAGTGTATGGTAAGGGTCCTGGATCAAGCAGTAACACAAACACTCAAGTGCTCCAAGGTTTCTGTTTGCAGGCCAAAGACAGGGCAGAATATGGTTCTGTTATTGATCTGCTCCAAAACAAAAACCCCATCAGAGAGTTCAAAAAAGACAGCGAAGTTACTGAAAAAGCAAATCCAAATCTGAGTTCAATATGGAATGAGTCAGTCGGAATGAATCAAAAGGGTTCCTTCAGTTCCCCAGAGACAGCTTCTGCAAGCCATGAGCCAAGTTCCACACCAGGTTACCCTGTCAATTTACTTGCAGGCATACTATTGTTGGTGCTGGACATCAATGCAAACATTTAA 1320 0.4447 MSVGETIGAILETLPVGFRFHPTDEELVDRHLKPKILGMDSQVEIIPEVDICKWEPWELPGFSVLQTDDLEWFFFSPLHKKYQNGSQFKRATKAGYWKPTGLGRDILSRTNKEVIGTRKTLNFYEGRGRAAVLTNWVIYQYQYHRSDIASLPSKRAYVLCRLKRKKDKKTGSYIPTPDEAVAGTGIHLNGPANNMTLDAGPSHHFSDIASDIRNYQVEEMTSDEDPQLPGLLNDIPFTPLDSDWFSDTEQGLDLDLPSPSGFNNSYGNMQFEDGVDTEFADSLIVDPDEYHCEGLTGQRISAVDSWNLNHGFVGRLSARPQSPLKGVYGKGPGSSSNTNTQVLQGFCLQAKDRAEYGSVIDLLQNKNPIREFKKDSEVTEKANPNLSSIWNESVGMNQKGSFSSPETASASHEPSSTPGYPVNLLAGILLLVLDINANI* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0777 439 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Vvi15g0777 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 209 - -
Vvi15g0777 439 Pfam No apical meristem (NAM) protein 15 142 IPR003441 GO:0003677|GO:0006355
Vvi15g0777 439 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vvi15g0777 439 ProSiteProfiles NAC domain profile. 14 165 IPR003441 GO:0003677|GO:0006355
Vvi15g0777 439 MobiDBLite consensus disorder prediction 397 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0777 Vvi-Chr15 16465901 16468917 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0777 7 293 NAC Transcription Factor Family AT4G35580 35.974 3.41e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0777 NAM 4.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0777 - - vvi:104881856 900.968