Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0776 ATGATAGCCACGATTTTGGAAACTTTACCAGTGGGATTCAGATTTTATCCCACTGATGAAGAACTGGTTGATAACCATTTGAAGTTGAAGATACTGGGCATGGAGTCCCCAGTAGACATCATCCCTGAGGTTGATATTTGCAAATGGGAGCCGTGGGAATTACCAGTTTTTTCAGTGATAAAAACAGATGATCCAGAGTGGTTCTTCTTCAGTCTTCTTGATTACAAGTATTCAAATGGCAGTCGTTCCAACAGGGCAACAAGTGCTGGCTACTGGAAACCCACCGGTCAGGATCGTGACATCTTCTCTGGCACCAACAAAGAGGTGATTGGTACCAAGAAAACTTTGGTTTTCTATAGAGGCCGTGGTCGTGGTGCCATCAGGACCAACTGGGTTATCCACGAGTATCGTGCAAATATTGCCGGCCTTCCTGCCAATAGGGCCTATGTTCTGTGTCGCTTAAAGAGAAAAACAGATGAGAATACAGGTTCTGATATTCCAATCCCTGATGAGGCTGTTGCAGGTAGTGGGATTCTTCAGAATGGCCTAGCCAACAACATGACCTTAGGTGCTGGGCCGAGCCACTATGCTAGCAATATTGCTTCTAATACTCGAAATTATCAAGTAGAGGATATGACTTTAGAAGAGGATCCTCAGATACAAGGTTTATTTAGTGAAACCACTTTTATTCCACTGGATTCTGATTTTTTCTCTGACACAGTGCAAGGACCTCACTTGGATCTCCCATTTTCCAATGGCTTTAACAATGTCTGTGGAAGGACGCCATTTCAGGATGACACCACTGAACAGGATGACGATGTTAATTGGTTCTTGAATACTCTTATCATCGATCAGGATGAACACCCTTTTGGAGAATTAGCCAGTCAGTGGAGCTCAGGTGTTGATAATGGGAACCTGAGACATGATTCTATTGGCAAGCTATCAGCCCACCCACAGAGCCCATTGAAGGGAGTACATGGTAAGGGTGGTGGATCAAGGGACACTGAAGTGCCCCAAGTTCAGGTAAAGATATGCCCTGCCCTCCAATATCTCACCAACCCCAAAATTAATTCTTGA 1077 0.4448 MIATILETLPVGFRFYPTDEELVDNHLKLKILGMESPVDIIPEVDICKWEPWELPVFSVIKTDDPEWFFFSLLDYKYSNGSRSNRATSAGYWKPTGQDRDIFSGTNKEVIGTKKTLVFYRGRGRGAIRTNWVIHEYRANIAGLPANRAYVLCRLKRKTDENTGSDIPIPDEAVAGSGILQNGLANNMTLGAGPSHYASNIASNTRNYQVEDMTLEEDPQIQGLFSETTFIPLDSDFFSDTVQGPHLDLPFSNGFNNVCGRTPFQDDTTEQDDDVNWFLNTLIIDQDEHPFGELASQWSSGVDNGNLRHDSIGKLSAHPQSPLKGVHGKGGGSRDTEVPQVQVKICPALQYLTNPKINS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0776 358 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Vvi15g0776 358 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Vvi15g0776 358 MobiDBLite consensus disorder prediction 308 336 - -
Vvi15g0776 358 ProSiteProfiles NAC domain profile. 9 157 IPR003441 GO:0003677|GO:0006355
Vvi15g0776 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 194 - -
Vvi15g0776 358 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0776 Vvi-Chr15 16461804 16463399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0776 1 319 NAC Transcription Factor Family AT4G35580 39.820 1.42e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0776 NAM 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0776 - - vvi:100262652 692.96