Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0775 ATGTCAGTAGATATGATAAACGATATTTTGAAACTTTTACCAGTGGGATGCGGATTTCGTCCCACCGATGAAGAACTGGTTAATCACTATCTGAAGTTGAAGATACAGGGCAAGGATTCCGAGGTACAGATCATCCCTGTGGTTGATGTCTGCAAATCGGAGCCTTGGGAATTACCAGATCTTTCACGGATAAAAACAGCTGATCCAGACTGGTTCTTCTTCAGTCCCGTTGATCTCAAGTATTCAAATGGCAGTCACGTCAACAGGCAAACAGAGGCTGGCTTCTGGAAACCCACCGGTCAGGATCGTGAAGTCAAGTCTGGGACCAACAAAATTGGTACCAAGAAAAGTTTGGTTTTCCATAAAGGCCGTGGTCGTGCTGCCGTTAGGACCAACTGGGTTATCCACCAGTATCGCACAGACATTGCTGGCCTTCCTGCCAATAGGGCCTATGTCCTGTGTCACTTAATGAAAAAAACAGATGAGAATACGGGGCCTGATGAGGCTGTTGCCGGTTCTGGAAATGGCCTAGCCAACAACATGACCTTAGGTGCTGGGCTGAGCCACCATGCCAGCGATATTGTTTCTGATATTGGAAATTATCAAGTAGAGGAAATGATTTTAGACGGGGATCCTGAGCTAGAAGGTTTATTGCATGAACCCACAATTCATCCTCTAGATTATGATTTGTTCCATCACACAGAGCAAGGACTTGATTTGGATCTCTCGTCTTCCAGTGGCTATAACAATAGTTGTGGAAGTATGCAGTTTCAGGATGAGGATGATGCAGAATTCGTTGATGGTCTTTTCATTGATCCGGACGGATACCCTTGTGGAGGATTAAGCGATGAGAGGAGCTCAGCTGTTTATGGTTCTATTGGCAGGCTATCAGCCCGCCCACAGAGCCCATTGAAGGGAGCATATGTTAAGGGATCAAGGAGTGCCACATACACTGAAGTGCTCCATGTTAAGCCTAGTCTATCGCAGGAAGCTTCCAGTCGTGTGGTTTCCAGTTCAAAGGAATGTATGCAGTCACCAATGGCTCAACAGCAGCATTCCGCTTCAGGATCATTCAGCATTAACCAGCAGAGGCTAGCCAACTCTGTAGCACAGGGGGTTGCTCCAAAGAGTGTCAAATTGGAAGGAAATGACTTAAATAATGAGATTCTCCTAGCAAAGTTAGCTAAATTGAGCGGCAGCATGACAAAATCGGAAGAAAATTCAGTCTCCATTAAGGCCAAAGACAGGGCAGAATATGGTTCTGCTACTGATCTGCTCCAAAGCAAAAACCCCATCAGAGAGTCCAAGAAAGACTGCGAAGTTCCTGAAAAAGCAAATCCAAAGCTGAGTTCAATGACAAGATTGAATGAGCCAGTTGGAAGCACTCAAAAGGGTTCCTTCAATTCCCCAGAGACAACTTCTGCAAGCCATGAACCTAGTTCCTCACCGGCTCAACTTGTCAATTTTCTCACAGGCATAATATTGTTTGTGATTCTTATTGTTGTCATGGTGCTAGACTTCATCGCAAAGGTTTGA 1536 0.4525 MSVDMINDILKLLPVGCGFRPTDEELVNHYLKLKIQGKDSEVQIIPVVDVCKSEPWELPDLSRIKTADPDWFFFSPVDLKYSNGSHVNRQTEAGFWKPTGQDREVKSGTNKIGTKKSLVFHKGRGRAAVRTNWVIHQYRTDIAGLPANRAYVLCHLMKKTDENTGPDEAVAGSGNGLANNMTLGAGLSHHASDIVSDIGNYQVEEMILDGDPELEGLLHEPTIHPLDYDLFHHTEQGLDLDLSSSSGYNNSCGSMQFQDEDDAEFVDGLFIDPDGYPCGGLSDERSSAVYGSIGRLSARPQSPLKGAYVKGSRSATYTEVLHVKPSLSQEASSRVVSSSKECMQSPMAQQQHSASGSFSINQQRLANSVAQGVAPKSVKLEGNDLNNEILLAKLAKLSGSMTKSEENSVSIKAKDRAEYGSATDLLQSKNPIRESKKDCEVPEKANPKLSSMTRLNEPVGSTQKGSFNSPETTSASHEPSSSPAQLVNFLTGIILFVILIVVMVLDFIAKV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0775 511 MobiDBLite consensus disorder prediction 449 481 - -
Vvi15g0775 511 Gene3D NAC domain 22 164 IPR036093 GO:0003677|GO:0006355
Vvi15g0775 511 MobiDBLite consensus disorder prediction 422 481 - -
Vvi15g0775 511 SUPERFAMILY NAC domain 12 159 IPR036093 GO:0003677|GO:0006355
Vvi15g0775 511 Pfam No apical meristem (NAM) protein 14 139 IPR003441 GO:0003677|GO:0006355
Vvi15g0775 511 ProSiteProfiles NAC domain profile. 13 159 IPR003441 GO:0003677|GO:0006355
Vvi15g0775 511 MobiDBLite consensus disorder prediction 430 444 - -
Vvi15g0775 511 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0775 Vvi-Chr15 16457552 16460000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0775 10 175 NAC Transcription Factor Family AT4G35580 52.601 4.34e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0775 NAM 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0775 - - vvi:100855128 977.237