Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0774 ATGTCAGGAGGAGGGATGATCGGCATGGCGTCGGAATCATTACCAGTGGGATTCAGATTTCATCCAACTGATGAAGAACTGGTTGATCACTATTTGAAGTTGAAGATACTGGGCATGAATTCCCATGTAGACATCATCCCTGAGGTTGATGTCTGCAAATGGGAGCCTTGGGATTTACCTGTTCTTTCAGTGATACAAACAAATGATCCAGAGTGGTTCTTCTTCTGTCCTCCTGATTACAAGTACCCAACTGGCCGTCGTTCCAACAGGGCAACAGAAGCTGGCTACTGGAAACCCACCGGTAAGGATCGTAACATCAAGTCTCGGGCCACCAAAGAGTTGCTTGGAACCAAGAAAACTTTGGTTTTCTATAGGGGCCGTGCTCCTCAATCAGTCAGGACCAACTGGGTTATGCACGAGTACCGCGCTGCTATTGCTTCCCTTCCTGCCAATAAGGCCTATGTTCTATGTCGCTTAAAGAGAAAAACAGATGAGAATACAGGGCCTGATATTCCTCCAGAAACTAACGTGAATGGTATTGTGTTTAATATGGATGGCCTAGCCAACATGGTGACCTTAGGTGGTGAGCCGAGCCATCATGCTAGCATTAGTGCTTCTAATATTGGAAATTATCAAGTAGAGGAACCGACTCCAGAGATGGATCCTCTGATTCAAGATTTATTTAATGAACCCACATTTATTCCAGCGGATTATGATTTTTCCTCTGACACAGAGCAAGGACCTCACTTGGATCTCCCATTTGCAAATGGCTTTAACAATGTCTGTGAAAGGACGCTATTTCAGGATGGCTCCTCTGAACCGGATGACGATGTTAGTAGGTTCTTGAATACTCTTATTGTTGATCAGGATGAACACCCTTTTGGAGAATTAGCCAGTCAGAGGAGCTCACCTGTTGATAGTGGGAACCTGAGGTATGGTTCTATAGGCAAGCTATCAGCCCGGCCACAGAGCCCATTGAAGGGAGTGTATGGTAAGGGTGGTGGATCAAGCAGTGACACAGACACTGAAGTGCTTCAAGTTCAGTATAGTCAATCGCGGAAAACTTCAAGCTTGATCAATGGGGTTTCCCATTCAAAGCATTGTATGCCATCACCAATGGCTCGACGGTCGTATGCCACATCACAGTTATCCAGCATTAACCAGCACAGAAAGGAAAACAAGAGTTCTCTTCATGATGAGTCCAGGAGATTTGCTGCTCCCTCCATTGAGAGATTAGACAACTTTGTGGCACAGCGGGTTGCTCCAAAGAGTGTCAAATTGGAAGGGAATGTCTCAAAGACTGATATACCCCAAGCTTTAACTAAATTGAGCTGCAGCATGTCAAAATCGGAAGAAAAGCCAGTCTCTACTAAGGCCAAGGAAATGACAGAATATGATTCTGCTACTGACCACAACAAAGACTCCATCAAAGAGTCCAAGAAAGACTGCGAAGTTACACAAAAAGCCAATGTGAAACTGAGTCCAAAGTCGATATGGAATGTGCCAGTCGGAAGCAATCAAAAGGGTTTCTTCAATTGCCCAGAGACAGCTTCTGGATATTTGGGTGTTACAAGCAGTCTGGATTGTAGATGTAACATTGGTGAAGACTCAAGAGAAGCAAGTGGGTTTTGGAGTATGGAGATATCTTAA 1650 0.4473 MSGGGMIGMASESLPVGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYRGRAPQSVRTNWVMHEYRAAIASLPANKAYVLCRLKRKTDENTGPDIPPETNVNGIVFNMDGLANMVTLGGEPSHHASISASNIGNYQVEEPTPEMDPLIQDLFNEPTFIPADYDFSSDTEQGPHLDLPFANGFNNVCERTLFQDGSSEPDDDVSRFLNTLIVDQDEHPFGELASQRSSPVDSGNLRYGSIGKLSARPQSPLKGVYGKGGGSSSDTDTEVLQVQYSQSRKTSSLINGVSHSKHCMPSPMARRSYATSQLSSINQHRKENKSSLHDESRRFAAPSIERLDNFVAQRVAPKSVKLEGNVSKTDIPQALTKLSCSMSKSEEKPVSTKAKEMTEYDSATDHNKDSIKESKKDCEVTQKANVKLSPKSIWNVPVGSNQKGFFNCPETASGYLGVTSSLDCRCNIGEDSREASGFWSMEIS* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0774 549 MobiDBLite consensus disorder prediction 445 481 - -
Vvi15g0774 549 SUPERFAMILY NAC domain 6 162 IPR036093 GO:0003677|GO:0006355
Vvi15g0774 549 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Vvi15g0774 549 MobiDBLite consensus disorder prediction 375 390 - -
Vvi15g0774 549 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Vvi15g0774 549 MobiDBLite consensus disorder prediction 296 401 - -
Vvi15g0774 549 Pfam No apical meristem (NAM) protein 15 142 IPR003441 GO:0003677|GO:0006355
Vvi15g0774 549 MobiDBLite consensus disorder prediction 453 481 - -
Vvi15g0774 549 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 363 - -
Vvi15g0774 549 MobiDBLite consensus disorder prediction 335 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0774 Vvi-Chr15 16452561 16455698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0774 6 428 NAC Transcription Factor Family AT4G35580 38.095 6.05e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi15g0774 NAM 8.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0774 - - vvi:100252386 1041.57