Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0761 ATGGTTCTGGAATGGAGTGAATTTTATGATATTGTTTGGTATTATTGCATATATAGGAGGGTGACTGGGCCTGCCAGGCGATCTACTAAGGGATTCTGGACAGAGCAAAAGGATCGAGTTTTAGCCTATGCCGTCAATAAGTTCAAGGGAAAAAACTGGAAAAAAATTGCTGAATGTGTCACTGGCACGACAGACGTTCAGTGCCTGCATCGCTGGCAGAAGGTCCTTGACCCTAACCTTGTTAAAGGGCCTTGGACAAAGGAGGAAGATGATCTTATCATTGAGCTGGTTGGGAAACAAGGTAACAAGAAGTGGGCTGAAGTAGCAAAATGCCTAACAGGCCGTATAGGCAAGCAATGCCGAGAAAGGTGGCATAACCATCTAAACCCAGCTATTAACAAAGCTCCATGGACCAAAGAAGAGGAATTGGTTCTTATACAGGCACACCAGAAATATGGGAATAAGTGGGCTGAAATAGCAAAGATTCTACCAGGAAGGACTGAAAACTCAATAAAAAATCACTGGAACTGCTCACTGAAGAAGAGACTCAACTTAAATGCATCTGCTTTTCATCTTCCTGGATTTCCCACCAACAATTTAGATAGTTTGAAAATGGAAAGAGAAACAGAAAATGGGGCAACTCAGGTTGTGAAACAAAGTCTTGGAACAACATTCTCTCTTGACAAGCAAATGGAATCACAGAGTAGTGTGGATACTCATCTGGATTTGGCTGTTGGATATTCTAGTGGAAAAGAGAGTCATCTACCACCGTTTAAGAAAGTGAACTGTAGATTTCCAAAAAGGGAAGCCATTGGTCCCATGAAGCCACCATTTCAGACCATATTTGATAAGAAAGAAGTTCCTGAATGTGATCTGGCGAGTGGACGATGCCAAGATAGTGCAGTTAATGATAAGCCTTCGCGAGACCCACATATCAAGGCTAACAAGCTCAATGAATCATGCAGTATTTCATTACGTGATCAATTGACTCTCTGGCATTCGGCTAAACCTGGTGAACATTCTCCTCCACTACCTCATTCTGGATGTATTCCACCCTCGTCAAATTCTCCATTGGATGAGATTGGTTGTAATGGAAAAACTAATGTTCTTCCCCACAAGATGGATCTTCCTGTCTCTGCTAAGAGATCACTTCAACCCCCAAAAAGGATGAGCAAATTACTTTCCACTGACAGCTCAGGTGCTATTGATTCAGGATCTAGAGGCCAGTCTAAAAATTTTTTTCCATCCACACAGACACATGAAGTTAATGGAACAAATGAGCATACTGAAAAATGTTTAAATTTAGAGGATAAAAATCTTGGTGGTTTGTGCTATGAGCCACTCAATCTGGAGGGTCTGAACACTTTCTTGCAATCTGGTACATTTCCCAGATCAGATAGCTATATTCAGCAATCATCTAGTCCAGTTTCCTCTTACACGCCAGCTAGCAATGGGAAAGGAATTTCTGGTAGTTGTAGCAGCCCAGAATCCATATTGAGGAGTGCAGCCAGGAGTTTCAAAAATACTCCATCTATCATTAGGAAACGAAACCGAACTCCCATAGAAACTGATAATGCAAATAACAATGATGGCACTGGTACAGAAGAAAAGACTGATAGTAAGGTTCTTCCAAAGGTGAAGCAGCTTTTCCTCTCTCCCCCCAAGTCCCAGAAGCTTGACCCATCTTCTGTAGTGAAACTTGTAGAAAAACGTCTGGAATATGCATTTGATAAAGAGCAGGATTAA 1746 0.417 MVLEWSEFYDIVWYYCIYRRVTGPARRSTKGFWTEQKDRVLAYAVNKFKGKNWKKIAECVTGTTDVQCLHRWQKVLDPNLVKGPWTKEEDDLIIELVGKQGNKKWAEVAKCLTGRIGKQCRERWHNHLNPAINKAPWTKEEELVLIQAHQKYGNKWAEIAKILPGRTENSIKNHWNCSLKKRLNLNASAFHLPGFPTNNLDSLKMERETENGATQVVKQSLGTTFSLDKQMESQSSVDTHLDLAVGYSSGKESHLPPFKKVNCRFPKREAIGPMKPPFQTIFDKKEVPECDLASGRCQDSAVNDKPSRDPHIKANKLNESCSISLRDQLTLWHSAKPGEHSPPLPHSGCIPPSSNSPLDEIGCNGKTNVLPHKMDLPVSAKRSLQPPKRMSKLLSTDSSGAIDSGSRGQSKNFFPSTQTHEVNGTNEHTEKCLNLEDKNLGGLCYEPLNLEGLNTFLQSGTFPRSDSYIQQSSSPVSSYTPASNGKGISGSCSSPESILRSAARSFKNTPSIIRKRNRTPIETDNANNNDGTGTEEKTDSKVLPKVKQLFLSPPKSQKLDPSSVVKLVEKRLEYAFDKEQD* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0761 581 CDD SANT 33 76 IPR001005 -
Vvi15g0761 581 FunFam Transcriptional activator Myb isoform A 82 134 - -
Vvi15g0761 581 Gene3D - 29 81 - -
Vvi15g0761 581 MobiDBLite consensus disorder prediction 389 423 - -
Vvi15g0761 581 MobiDBLite consensus disorder prediction 380 426 - -
Vvi15g0761 581 MobiDBLite consensus disorder prediction 334 366 - -
Vvi15g0761 581 ProSiteProfiles Myb-like domain profile. 25 76 IPR001005 -
Vvi15g0761 581 MobiDBLite consensus disorder prediction 465 533 - -
Vvi15g0761 581 ProSiteProfiles Myb-like domain profile. 77 128 IPR001005 -
Vvi15g0761 581 PANTHER MYB PROTEIN-RELATED 30 115 - -
Vvi15g0761 581 ProSiteProfiles Myb-like domain profile. 129 179 IPR001005 -
Vvi15g0761 581 MobiDBLite consensus disorder prediction 465 542 - -
Vvi15g0761 581 Pfam Myb-like DNA-binding domain 85 142 - -
Vvi15g0761 581 SUPERFAMILY Homeodomain-like 79 175 IPR009057 -
Vvi15g0761 581 FunFam Transcriptional activator Myb isoform A 29 81 - -
Vvi15g0761 581 CDD SANT 136 176 IPR001005 -
Vvi15g0761 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 76 IPR017930 -
Vvi15g0761 581 CDD SANT 84 128 IPR001005 -
Vvi15g0761 581 SMART sant 133 181 IPR001005 -
Vvi15g0761 581 SMART sant 29 78 IPR001005 -
Vvi15g0761 581 SMART sant 81 130 IPR001005 -
Vvi15g0761 581 SUPERFAMILY Homeodomain-like 28 83 IPR009057 -
Vvi15g0761 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 183 IPR017930 -
Vvi15g0761 581 Gene3D - 82 133 - -
Vvi15g0761 581 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 132 IPR017930 -
Vvi15g0761 581 Pfam Myb-like DNA-binding domain 31 76 IPR001005 -
Vvi15g0761 581 Gene3D - 135 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0761 Vvi-Chr15 16221913 16224544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0761 81 187 MYB Transcription Factor Family AT5G11510 37.963 1.72e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi15g0761 Myb_DNA-bind_6 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0761 - - vvi:104881864 1132.47