Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0752 ATGTCGACGGCTAGGTCGTCCGCGGACGCTACCGATACGACGCCGTTGCTTCATGCATCGGTTTCCGACCAAATTCTACGTTCTCGCCGGCTCATCCGCCGGCCTCCAAGCCTTCGCGGCGCCGCGAGGTTTCTCCGGCGGGCGAGCAGCCGGAGGATCATGCGGGAGCCCTCGATGCGTGTGAGAGAAACGGCCGCTGAACAGCTAGAGGAGCGGCAAAGTGATTGGGCGTATTCGAAGCCTATAGTGATCCTTGATATTGTTTGGAATCTGGCGTTCGTGGTTGTGGCGATGACCGTCTTGGTCATGAGTAGAGATGAGACGCCGTCGACGCCGTTGAGATTGTGGATTATAGGGTATGGCTTGCAGTGCGTGTTGCATATGGTGTGTGTTTGTGTCGAGTATAAGAGACGGCGTCGTTTGGTGAGTTCAGGGGCGTTGGAACGCAGCGGAGGCTGGGGCAGTGGCCATTTGAGTTCGAGTTCGGGAAGTGATGAAGGGGATCCTATTGATTATAGGGTGGAAGTAAGGAATCGCGATGAAGATGAAACTAGTGTTGCTAAGCATCTGGAGTCTGCAAATACTATGTTCTCGTTTATTTGGTGGATCATTGGATTCTACTGGGTATCTGCTGGTGGCCAAGATTTGACACGTGACTCACCTCAACTTTACTGGCTCTGTATCGTATTTTTGGCATTTGATGTGTTCTTTGTTGTTATCTGTGTTGCTGTGGCCTGTGTCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATAATAGCAATCTTATATACGGTGGCAGATCAGGAAGGTGCAACCAAGGAAGAAATCGAGAGACTTCCAAAATACAAATTCCGGAGGATTGGCGAGTCTGAGAAACTTAATGGTGAGATTCAGGAATCTTTTGGTGGGATAATGACGGAGTGCGACACTGACACACCCATGGAACATGTTATTCCCCAGGAGGATGCTGAATGTTGCATCTGCCTCTCTGCCTACGAGGATGAAACCGAGCTGCGCGAGCTCCCTTGCCGTCACCGCTTCCACTGCACCTGCATAGACAAGTGGCTATACATCAATGCCACCTGCCCTCTCTGCAAGCTGAACATACTAAAAAATGCCAGCCAAAGTGGGTGTGAAGGAGGATAA 1149 0.5074 MSTARSSADATDTTPLLHASVSDQILRSRRLIRRPPSLRGAARFLRRASSRRIMREPSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNLAFVVVAMTVLVMSRDETPSTPLRLWIIGYGLQCVLHMVCVCVEYKRRRRLVSSGALERSGGWGSGHLSSSSGSDEGDPIDYRVEVRNRDEDETSVAKHLESANTMFSFIWWIIGFYWVSAGGQDLTRDSPQLYWLCIVFLAFDVFFVVICVAVACVIGIAVCCCLPCIIAILYTVADQEGATKEEIERLPKYKFRRIGESEKLNGEIQESFGGIMTECDTDTPMEHVIPQEDAECCICLSAYEDETELRELPCRHRFHCTCIDKWLYINATCPLCKLNILKNASQSGCEGG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0752 382 MobiDBLite consensus disorder prediction 147 169 - -
Vvi15g0752 382 PANTHER TARGET OF ERK KINASE MPK-1 48 373 - -
Vvi15g0752 382 SUPERFAMILY RING/U-box 316 373 - -
Vvi15g0752 382 CDD RING-H2_PA-TM-RING 325 367 - -
Vvi15g0752 382 FunFam E3 ubiquitin-protein ligase At1g12760 312 377 - -
Vvi15g0752 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 376 IPR013083 -
Vvi15g0752 382 SMART ring_2 326 366 IPR001841 -
Vvi15g0752 382 Pfam Ring finger domain 325 367 IPR001841 -
Vvi15g0752 382 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0752 Vvi-Chr15 16165687 16169795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0752 1 376 C3H Transcription Factor Family AT1G68070 46.842 3.20e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0752 - - vvi:100243778 694.501