Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0750 ATGAATGTGATGCGTCGTCTCAAGAGCATTGCTTCTGGTCGATCCTCCGTTTCTGATCCCGGTGGGGATTCCAGCACAAAGAGGGCAAAGGTCGATCAAGAAGCAGAACAGAAAGTTGCTGATGAAACGCATTCAGTAGAGAAAAGCACAAGTCTAGAGCAGCATATGGCTTCTACATCACAGGAAACTGCTGCAAGCACATCCAATGTATCCTCTATTGCAAGAACCGAACAGTCTGGTTATGATCAACTTCCCAAAGAAATGCATGACATGAAAATCAGAGATGAAAAAGTTGACCCTCATGATGATAAGGATGCAGAGCCTACTGTTGTGAGTGGTAGTGGAACAGAAACAGGTCAGATAATTGCAACTACAATAGGTGGTCGCAATGGACAACCAAAACAGACAGTCTCCTACATGGCTGAGCGGGTGGTTGGCACTGGTTCCTTTGGGGTCGTTTTTCAGGCTAAATGCCTAGAAACAGGTGAAGCAGTGGCAATTAAGAAGGTGCTGCAGGATAAGAGATACAAGAATAGAGAACTCCAAATTATGCGCGTACTTGACCATCCTAATGTTGTTCAACTAAAGCACTGTTTCTTCTCAACTTCTGAAAAAGATGTGGTGTACCTTAATCTTGTCCTTGAGTATGTATCTGAAACTGTCTACCGAGTTTCAAGGCATCACAGCAGGATGAACCAGCACATGCCCATTATATATGTGCAACTGTATGCATACCAGATCTGCCGTGCACTTAACTACATGCACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTGGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGTGGTCTGCAGGTTGCGTTGTGGCTGAGCTTCTTCTTGGCCAGCCACTGTTTCCTGGGGAAAGTGGTGTTGATCAGCTGGTGGAAATCATTAAGATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAGCTTTTCCATAAGCGAATGCCCCCAGAAGCTGTGGATCTTGTATCAAGGCTGCTTCAGTATTCGCCAAATTTGAGATGCACCGCCCTGGAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCCTGCTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGAGCTGGTACACTCAACTCCTGAACTGCGTCAACGTCTCATTCCTGAGCATGCAAGGAAATAA 1407 0.4442 MNVMRRLKSIASGRSSVSDPGGDSSTKRAKVDQEAEQKVADETHSVEKSTSLEQHMASTSQETAASTSNVSSIARTEQSGYDQLPKEMHDMKIRDEKVDPHDDKDAEPTVVSGSGTETGQIIATTIGGRNGQPKQTVSYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQIMRVLDHPNVVQLKHCFFSTSEKDVVYLNLVLEYVSETVYRVSRHHSRMNQHMPIIYVQLYAYQICRALNYMHSVIGVCHRDIKPQNLLVNPQTHQLKICDFGSAKKLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSAGCVVAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYNEFKFPQIKAHPWHKLFHKRMPPEAVDLVSRLLQYSPNLRCTALEACAHHFFDDLRETNACLPNGRPLPPLFNFTPQELVHSTPELRQRLIPEHARK* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0750 468 Gene3D Phosphorylase Kinase; domain 1 122 218 - -
Vvi15g0750 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vvi15g0750 468 ProSitePatterns Protein kinases ATP-binding region signature. 145 169 IPR017441 GO:0005524
Vvi15g0750 468 CDD STKc_GSK3 134 426 IPR039192 -
Vvi15g0750 468 ProSiteProfiles Protein kinase domain profile. 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0750 468 MobiDBLite consensus disorder prediction 50 79 - -
Vvi15g0750 468 MobiDBLite consensus disorder prediction 1 86 - -
Vvi15g0750 468 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 92 467 - -
Vvi15g0750 468 MobiDBLite consensus disorder prediction 25 49 - -
Vvi15g0750 468 SUPERFAMILY Protein kinase-like (PK-like) 138 453 IPR011009 -
Vvi15g0750 468 MobiDBLite consensus disorder prediction 9 23 - -
Vvi15g0750 468 FunFam Glycogen synthase kinase-3 beta 123 218 - -
Vvi15g0750 468 FunFam Shaggy-related protein kinase kappa 219 467 - -
Vvi15g0750 468 Gene3D Transferase(Phosphotransferase) domain 1 219 467 - -
Vvi15g0750 468 MobiDBLite consensus disorder prediction 96 115 - -
Vvi15g0750 468 SMART serkin_6 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0750 468 Pfam Protein kinase domain 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0750 Vvi-Chr15 16152179 16157643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0750 145 432 Core Cell Cycle Gene Families AT1G76540 35.811 4.01e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vvi15g0750 Pkinase 3.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0750 K00924 - vvi:100266096 945.266