Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0749 ATGAGTTTTGGGGGTTTTCTTGACAATAGTTCTGGTGGCGGTGGTGCAAGAATCGTGGCTGATATACCTTACAGCAACAACATGGCCACTGGTGCAATCGCTCAGCCACGCCTTGTCTCTCCATCTCTTGCCAAGTCCATGTTCAGCTCGCCTGGACTCTCTCTTGCTCTCCAAACTAGTATGGAGGGTCAAGGTGAGGTGACTCGACTGGCAGAAAATTTTGAGTCCGGTGGTGGCAGAAGAAGCAGAGAAGATGAGCATGAGAGCAGATCTGGAAGTGATAACATGGACGGTGCTTCTGGGGACGATCAGGATGCTGCCGACAACCCACCAAGGAAGAAGAGATACCACCGACACACGCCTCAGCAAATCCAAGAACTTGAAGCTCTGTTCAAGGAGTGTCCTCATCCTGATGAAAAGCAAAGGTTGGAACTCAGCAGAAGGCTTAGCTTGGAGACCAGGCAAGTGAAGTTCTGGTTCCAAAATCGCCGTACCCAGATGAAGACCCAATTGGAACGACATGAGAACTCAATTCTTAGACAAGAAAATGATAAACTTCGGGCTGAAAACATGTCGATAAGGGATGCTATGAGGAACCCAATTTGCACCAACTGTGGTGGTCCGGCAATTATTGGTGACATATCTCTAGAGGAGCAGCATCTTCGGATTGAGAATGCCCGCTTAAAGGATGAATTAGATCGGGTTTGTGCGCTTGCAGGCAAGTTCTTGGGCCGTCCCATTTCATCATTGGCTTCTTCTATGGCCCCAGCAATGCCCAGCTCTAGTTTGGAACTTGGAGTTGGAAGCAATGGTTTTGGTGGTTTGAGCACTGTAGCAACAACATTGCCTTTGGGACATGATTTTGGAGGTGGGATTTCAAGCACGTTGCCTGTGGCGCCTCCAACATCAACGACTGGTGTAACAGGCTTGGAGCGGTCTTTGGAGAGATCTATGTTTCTAGAGCTTGCTTTAGCTGCTATGGATGAATTGGTTAAGATGGCTCAGACTGATGAGCCTTTATGGGTCAGGAGCTTGGAAGGGGGACGGGAAATATTGAACCTTGAGGAATACATGAGAACATTTACCCCTTGCATTGGCATGAAGCCCAGTGGCTTTGTCACCGAGTCTACAAGGGAGACTGGTATGGTAATCATCAACAGCTTGGCTCTTGTTGAGACATTAATGGACTCGAATCGATGGGCAGAGATGTTTCCATGTATGATTGCCAGAACCTCTACTACTGATGTGATATCAAGTGGCATGGGGGGGACCAGAAATGGTGCACTTCAGCTGATGCATGCTGAACTCCAAGTCCTTTCACCTTTGGTTCCTGTTCGCGAGGTAAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGCGTGTGGGCTGTGGTTGATGTATCCATCGATACAATTCGAGAAACATCGGTTGCACCAACATTTGTGAACTGCAGGAGGCTTCCTTCTGGCTGTGTAGTGCAAGATATGCCCAATGGGTACTCCAAGGTTACATGGGTTGAGCATGCAGAATACGATGAGAGTGCAGTCCACCAGCTCTACCGGCCACTACTTGGTTCTGGCATGGGGTTCGGTGCCCAGAGGTGGGTGGCCACCCTTCAAAGGCAGTGCGAGTGTCTCGCCATACTCATGTCCTCCACCGTGCCCACCCGGGATCACACAGCAGCAATAACTGCAGGCGGGCGGCGGAGCATGCTGAAGCTGGCCCAACGAATGACCGACAACTTCTGCGCCGGTGTCTGCGCTTCAACAGTCCACAAATGGAACAAGCTGTGCGCCGGCAACGTGGACGAAGACGTGCGAGTAATGACCAGAAAGAGCGTGGACGATCCCGGGGAGCCACCGGGCATTGTGCTGAGTGCAGCAACCTCGGTCTGGCTGCCGGTGTCTCCTCAGAGGCTCTTCGACTTCCTCCGCGATGAACGGCTGAGAAGCGAGTGGGACATCCTATCCAACGGCGGACCCATGCAGGAGATGGCCCATATCGCTAAGGGCCAAGATCATGGCAACTGCGTCTCCCTACTCAGAGCCAGTGCAATGAACGCGAACCAGAGCAGTATGCTGATTCTGCAGGAGACTTGCATCGACGCGGCTGGGTCGCTTGTGGTGTACGCGCCCGTTGACATCCCCGCCATGCACGTTGTGATGAACGGTGGAGATTCCGCCTACGTGGCTCTCCTCCCATCTGGGTTCGCCATCGTCCCTGATGGGCCTGGCTCTCGCGGGCCCAACTCTGGGGTCCACACCAACAGCGGAGGCCCAAATAGAGTCAGTGGGTCCCTTCTCACCGTGGCTTTCCAGATCCTTGTGAACAGTTTGCCTACGGCCAAGCTCACGGTAGAGTCGGTGGAGACTGTCAACAATCTCATCTCCTGCACCGTTCAGAAGATCAAGGCCGCCCTTCACTGCGAAAGCTGA 2436 0.5275 MSFGGFLDNSSGGGGARIVADIPYSNNMATGAIAQPRLVSPSLAKSMFSSPGLSLALQTSMEGQGEVTRLAENFESGGGRRSREDEHESRSGSDNMDGASGDDQDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMKTQLERHENSILRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLASSMAPAMPSSSLELGVGSNGFGGLSTVATTLPLGHDFGGGISSTLPVAPPTSTTGVTGLERSLERSMFLELALAAMDELVKMAQTDEPLWVRSLEGGREILNLEEYMRTFTPCIGMKPSGFVTESTRETGMVIINSLALVETLMDSNRWAEMFPCMIARTSTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSVAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESAVHQLYRPLLGSGMGFGAQRWVATLQRQCECLAILMSSTVPTRDHTAAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLCAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPNSGVHTNSGGPNRVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0749 811 CDD homeodomain 112 170 IPR001356 GO:0003677
Vvi15g0749 811 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Vvi15g0749 811 SMART START_1 321 545 IPR002913 GO:0008289
Vvi15g0749 811 SUPERFAMILY Bet v1-like 574 804 - -
Vvi15g0749 811 SMART HOX_1 111 174 IPR001356 GO:0003677
Vvi15g0749 811 FunFam Homeobox-leucine zipper protein HDG1 100 186 - -
Vvi15g0749 811 ProSiteProfiles START domain profile. 312 548 IPR002913 GO:0008289
Vvi15g0749 811 MobiDBLite consensus disorder prediction 71 120 - -
Vvi15g0749 811 FunFam Homeobox-leucine zipper protein GLABRA 2 321 544 - -
Vvi15g0749 811 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Vvi15g0749 811 Pfam Homeodomain 113 168 IPR001356 GO:0003677
Vvi15g0749 811 Pfam START domain 321 545 IPR002913 GO:0008289
Vvi15g0749 811 Gene3D - 99 186 - -
Vvi15g0749 811 MobiDBLite consensus disorder prediction 76 93 - -
Vvi15g0749 811 SUPERFAMILY Bet v1-like 314 545 - -
Vvi15g0749 811 Coils Coil 164 196 - -
Vvi15g0749 811 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 109 808 IPR042160 -
Vvi15g0749 811 CDD START_ArGLABRA2_like 316 544 - -
Vvi15g0749 811 SUPERFAMILY Homeodomain-like 96 170 IPR009057 -
Vvi15g0749 811 Gene3D - 387 542 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0749 Vvi-Chr15 16133409 16138270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0749 1 811 Homeobox Transcription Factor Family AT3G61150 66.667 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi15g0749 START 1.1e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0749 K09338 - vvi:100260889 1558.5