Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0735 ATGGTAGAAGATGGCGGAGATGAGTTTTTGGCTGATAACCAATCAGCAGATAAGTTGTTAGCTCGTGCGCAAGAGCTCGTTCCAGTGGCTCTTGATAATTCCAGGGAGGTTAAGGGGTTCCTGGGTAGATGGAAGATGATAATTTCGAAGTTGGAGCAGATCCCATCATGCTTGTCAGACTTGTCGAGCCATCCTTGCTTCTCGAAGAACACACTCTGTAAGGAGCAATTGCAGGCAGTATTGAGGACTTTGAAAGAAACAATTGAATTGGCGGAGCTATGCATTAAGGAGAAATATGAAGGGAAGCTTCGGATGCAGAGTGATCTTGATGGATTGATTGGGAAATTGGATTTGAATTTGCGGGACTGTGGGCTCTTGGTGAAGACTGGGGTGCTCGGTGAGGCTATGATGCCTTTAACTGTGGCTGGTTCATCAGCAGAACCAGAGGCTGGCACTCATTCCAATATAAGGGAGTTTCTTGCCCGCCTTCAGATCGGGCACTTGGAGGCCAAGCATAAAGCTCTTGACAGCCTTGTTGAAGTAATGAAAGAGGATGAGAAGAATGTGTTGGCTGTTCTGGGACGTAGCAACATCGCTGCTTTGGTTCAATTACTCACTGCAACTTCCCCTCGAATCCGGGAGAAGACAGTAACTGTCATATGCTCACTTGCAGAATCAGGGAGTTGTGAGAATTGGCTTGTTTCGGAAGGTGTTCTTCCACCTCTGATAAGGCTTGTTGAGTCTGGTAGTGCTGTCGGTAAAGAGAAGGCCACAATTTCGCTCCAGAGATTATCAATGTCAGCTGAAACAGCCCGTTCAATTGTTGGGCATGGTGGGGTTCGCCCGCTGATTGAGATCTGTCAAACCAGTGATTCTGTCTCACAAGCTGCAGCTGCTAGCACCTTGAAGAATTTATCGGTTGTACCAGAGGTTCGACAGACCCTCGCTGAAGAAGGGATTATAAAGGTTATGATCAATCTCCTTGATTGTGGAATATTATTAGGATCTAAAGAATATGCTGCAGAATGCTTGCAGAACCTCACTGCAAGCAATGAAAACCTTCGAAGGTCTGTTATCACTGAGGGTGGAGTTCGGAGCCTGTTGGCTTACCTAGACGGTCCCTTGCCCCAAGAATCTGCAGTTGGGGCATTAAGGAATTTGGTGGGCTCAGTTTCTATGGAAGTTTTGGTTTCTCTTGGTTTCCTTCCCCGTTTGGTTCATGTACTTAAATCTGGATCCTTGGGCGCACAGCAAGCTGCTGCATCAGCCATCTGTCGGGTTTGCAGCTCAACAGAAATGAAGAAACTGGTAGGTGAAGCAGGGTGCATTCCTCTGCTTGTGAAGATGCTGGAGGCCAAGACAAACAGTGTAAGAGAGGTTGCTTCACAGGCACTTTCAGGCCTGGTGGCCATTTCACAGAATTGCAAAGAAGTTAAGAGGGGTGATAAAAGTGTGCCAAATTTGGTCCAGTTGCTTGACCCAAGTCCACAAAACACTGCAAAAAAGTATGCCGTTTCCTGCCTCGCAGCTCTCTCTTCAAGTAAGAAATGTAAGAAGCTCATGATCTCATATGGAGCAATTGGGTATCTCAAGAAGCTTAATGAGATGGACATTCCTGGTGCCAAGAAGCTACTTGAGCGATTGGAAAGGGGGAAACTGAGAAGTTTGTTCACCAGAAAATAG 1683 0.4658 MVEDGGDEFLADNQSADKLLARAQELVPVALDNSREVKGFLGRWKMIISKLEQIPSCLSDLSSHPCFSKNTLCKEQLQAVLRTLKETIELAELCIKEKYEGKLRMQSDLDGLIGKLDLNLRDCGLLVKTGVLGEAMMPLTVAGSSAEPEAGTHSNIREFLARLQIGHLEAKHKALDSLVEVMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARSIVGHGGVRPLIEICQTSDSVSQAAAASTLKNLSVVPEVRQTLAEEGIIKVMINLLDCGILLGSKEYAAECLQNLTASNENLRRSVITEGGVRSLLAYLDGPLPQESAVGALRNLVGSVSMEVLVSLGFLPRLVHVLKSGSLGAQQAAASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKTNSVREVASQALSGLVAISQNCKEVKRGDKSVPNLVQLLDPSPQNTAKKYAVSCLAALSSSKKCKKLMISYGAIGYLKKLNEMDIPGAKKLLERLERGKLRSLFTRK* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0735 560 Gene3D - 456 543 IPR011989 -
Vvi15g0735 560 Gene3D - 374 455 IPR011989 -
Vvi15g0735 560 SMART arm_5 471 513 IPR000225 GO:0005515
Vvi15g0735 560 SMART arm_5 350 389 IPR000225 GO:0005515
Vvi15g0735 560 SMART arm_5 430 470 IPR000225 GO:0005515
Vvi15g0735 560 SMART arm_5 267 307 IPR000225 GO:0005515
Vvi15g0735 560 SMART arm_5 394 429 IPR000225 GO:0005515
Vvi15g0735 560 SMART arm_5 185 225 IPR000225 GO:0005515
Vvi15g0735 560 SMART arm_5 308 349 IPR000225 GO:0005515
Vvi15g0735 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 558 - -
Vvi15g0735 560 Coils Coil 74 94 - -
Vvi15g0735 560 Pfam Armadillo/beta-catenin-like repeat 431 469 IPR000225 GO:0005515
Vvi15g0735 560 Gene3D - 146 371 IPR011989 -
Vvi15g0735 560 SUPERFAMILY ARM repeat 156 533 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0735 Vvi-Chr15 16013643 16015325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0735 206 468 U-box Gene Family AT3G54790 30.597 2.40e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0735 - - vvi:100250612 1043.49