Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0734 ATGCTGATCTCGCAGCCAGTGGCAGGATTTGCTTTTGTTTATATGGATGATGAACGAGATGCAGAGGATGCAATTCGAAGACTTGACAGGACAGTATTTGGCAGAAAGGGGCGTCAACTTCGTGTTGAATGGACAAAGCAAGAACGAGGGATTAGAAGGCCTGGTGGTTCAAGAAAATCTTCAGCTAATATGAAACCCTCAAAAACCTTGTTTGTGATTAATTTTGATCCAATTCATACTCGGACCAGGGATCTGGAGAGGCACTTTGACCTATATGGGAAAATATTGAACATAAGGATCAGAAGGAATTTTGCATTCATTCAGTTTGAATCACAGGAGGATGCCACCAAAGCATTGGATGCAACAAACATGAGCAAGTTCATGGATCGGGTTATTTCAGTAGAATATGCGGCTCGAGATGATGATGATGATAGAAGAAATGGGTATAGCCCTGAAAGAAGAGGACGTGACATGTCTCCTGATAGGAGAAGTCATGATCGAGGGCGATCCCCAAGTCCATACCATAGGGATAGGGCTAGCCCAGACTATGGGCATGGAGCAAACGCAAATTCCAGGTCTGAACCGCGAGGAAGCCCTAACTATGACAGAGATGAAAGCCCAGTCAATGAGAGATACCACAGCCGATCACCCCCACCACGTGAAAGATCCCGATCTTGA 678 0.4528 MLISQPVAGFAFVYMDDERDAEDAIRRLDRTVFGRKGRQLRVEWTKQERGIRRPGGSRKSSANMKPSKTLFVINFDPIHTRTRDLERHFDLYGKILNIRIRRNFAFIQFESQEDATKALDATNMSKFMDRVISVEYAARDDDDDRRNGYSPERRGRDMSPDRRSHDRGRSPSPYHRDRASPDYGHGANANSRSEPRGSPNYDRDESPVNERYHSRSPPPRERSRS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0734 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 139 IPR000504 GO:0003723
Vvi15g0734 225 MobiDBLite consensus disorder prediction 139 225 - -
Vvi15g0734 225 MobiDBLite consensus disorder prediction 197 225 - -
Vvi15g0734 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Vvi15g0734 225 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 10 83 - -
Vvi15g0734 225 MobiDBLite consensus disorder prediction 139 182 - -
Vvi15g0734 225 FunFam Serine/arginine-rich splicing factor RS31 60 151 - -
Vvi15g0734 225 SMART rrm1_1 69 135 IPR000504 GO:0003723
Vvi15g0734 225 Gene3D - 63 149 IPR012677 -
Vvi15g0734 225 Gene3D - 4 62 IPR012677 -
Vvi15g0734 225 SUPERFAMILY RNA-binding domain, RBD 8 141 IPR035979 GO:0003676
Vvi15g0734 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 132 IPR000504 GO:0003723
Vvi15g0734 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 35 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0734 Vvi-Chr15 16007790 16009418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0734 10 149 Eukaryotic Initiation Factors Gene Family AT3G16380 27.451 2.98e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0734 K12893 - vvi:100262670 416.387