Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi15g0731 | ATGTTGGGTGGGATGAATTTGATTACTACTGTTATTGGGTTTGGGATGAGTGCCACTTTTATTGTGTTTGTATGCACAAGATTGATATGTGGGAGGCTCCGAGGGGTCGAGTCGCGGCAGATGTTCGAAATTGACTCTAGGATCGATCTTGAACAGCCAGAGCATCGGATTAGTGGCCTTGAACCTGTTATGGTTGCTGCAATCCCAACAATGAAGTTCAACCGGGAGGCTTTTAGTTCTGTGGAAGATGCACAGTGTTCAATATGTTTGGGTGAGTATCAAGAGAAAGAGGTATTGAGAATCATGCCCAAATGTGGACACAACTTTCATCTCTCTTGCATTGATGTATGGCTAAGAAAACAGTCTACTTGCCCAGTCTGCCGGCTCTCGTTACAAGACTCTTTTGAAACAAAACACGTGAGGCCAGAAGCATTTGACACGGCCCAATCTGTTGACAGTCCTGAGATTTCTGTAGATCGTTCTCATCAGTGGCTACTTCCTGGGCCAGAGCGTTCAGTGGAGAATGGAACTAACCAAGTGCACCATGAATCCATACCTGGATATCCAGAGCCTGCACAATCTGGAGAAGAAGGAGCAAGACGATGA | 606 | 0.4587 | MLGGMNLITTVIGFGMSATFIVFVCTRLICGRLRGVESRQMFEIDSRIDLEQPEHRISGLEPVMVAAIPTMKFNREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLRKQSTCPVCRLSLQDSFETKHVRPEAFDTAQSVDSPEISVDRSHQWLLPGPERSVENGTNQVHHESIPGYPEPAQSGEEGARR* | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi15g0731 | 201 | PANTHER | OS11G0150450 PROTEIN | 3 | 182 | - | - | |
| Vvi15g0731 | 201 | MobiDBLite | consensus disorder prediction | 166 | 201 | - | - | |
| Vvi15g0731 | 201 | FunFam | Putative RING zinc finger domain superfamily protein | 62 | 134 | - | - | |
| Vvi15g0731 | 201 | SMART | ring_2 | 86 | 127 | IPR001841 | - | |
| Vvi15g0731 | 201 | CDD | RING-H2_EL5-like | 85 | 128 | - | - | |
| Vvi15g0731 | 201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 137 | IPR013083 | - | |
| Vvi15g0731 | 201 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 128 | IPR001841 | - | |
| Vvi15g0731 | 201 | SUPERFAMILY | RING/U-box | 76 | 134 | - | - | |
| Vvi15g0731 | 201 | Pfam | Ring finger domain | 85 | 128 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi15g0731 | Vvi-Chr15 | 15989056 | 15990887 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi15g0731 | 59 | 163 | C3H Transcription Factor Family | AT4G10160 | 40.187 | 1.97e-21 | 86.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi15g0731 | - | - | vvi:100267800 | 414.846 |