Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0725 ATGTCGGTGACTCTGCATACCAACCTCGGTGACATCAAATGCGAGATCTCTTGCGACGAGGTCTCTAAAACGGCCGAGAATTTTTTGGCACTCTGTGCTAGTGGCTATTATGATGGAACCATATTTCATCGAAATATTAAAGGTTTTATGATCCAAGGTGGAGACCCAACAGGTACAGGCAAAGGGGGGACCAGCATATGGGGAAAGAAGTTCAATGATGAGATACGAGAGTCTCTCAAGCACAATGCAAGGGGAATATTATCAATGGCTAATAGTGGCCCCAATACTAATGGAAGCCAGTTCTTCATAACGTATGCTAAGCAGCCACATTTGAATGGATTGTACACTGTGTTTGGAAGAGTGATTCATGGATTTGAAGTCCTTGATATCATGGAGAAGACTCAAACTGGAGCTGGGGATCGGCCTCTTGCAGAGATCAGGCTCAATCGAGTGACAATACATGCTAATCCACTTGCTGGCTAG 483 0.4472 MSVTLHTNLGDIKCEISCDEVSKTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGAGDRPLAEIRLNRVTIHANPLAG* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0725 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Vvi15g0725 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Vvi15g0725 160 Gene3D - 1 160 IPR029000 -
Vvi15g0725 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 153 IPR044666 -
Vvi15g0725 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Vvi15g0725 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Vvi15g0725 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Vvi15g0725 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Vvi15g0725 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vvi15g0725 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Vvi15g0725 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Vvi15g0725 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vvi15g0725 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Vvi15g0725 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0725 Vvi-Chr15 15962150 15964695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0725 3 157 U-box Gene Family AT5G67530 52.903 1.40e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0725 K12734 - vvi:100247290 326.635