Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0723 ATGGCAATGGCGAAGGGCAATCAACAGCAAGAGAAACGACACCGTTCCATCTTCGACCTTCCTACAACCTTCTTGTACTCCTGTCGTCTCCTTCCTTCTTCTTCTTCTTCGTCGTATTCTGCAAATCTTTTTTCAGAAACGAAGGCTGCGTCTCCAAGCTCAACTCTCGAAACCCTAGACGAGTCCAAGAAGTTGGAGCACAGTGCTAATACTTCTCTGTCCAGATGGTCCTGCAACACCTGCAAGTCCGAGTTCGACTCCCTCCAAGACCAACGCTCCCATTTCAAATCCGATGTTCATCGGTTCAATGTAAAGTTGAGCATCGCCGGAAAGGGTATTGTGAAAGAGGAAGACTTTGATGAGCTAACTGCAGATACTTTGTTCAAAGACTATGATATATCGAGTATATCAGGATCAGAAGATGAAGTTGACAAGAGATGTTGGGCCCAGAATGACATGCACAAGGGTTCAGATGACAATGTTAAACGAAAGCTATTTATTCAGCTTCAGACAGGGGAGAAAGTTTCACTTTGGAAGTGTTTAGTTTTGGATGAATCTGAAAATATTTCATATGAGAACGACCCTGGTTGTTGCATGCCATGTTTGAAAGAGAGTGATGTGATTGAGAAGTTGAAAACTGTGATCCACGAGCCTAGGGATAATACCCATTTGAGGGTTGTGTTGCTTGCTAGTGGTGGGCATTTTGCTGGCTGTGTCTTTGATGGTAACTCTGTTGTGGCTCACAGAACATTCCACAGATATGTCGTAAGGGCCAAGGCTGGTAAAAAGCAGTCATCAAAAGATGCAGGTGGCAGGGCTGCACATTCTGCTGGAGCTTCACTTCGCAGATATAACGAACTCGCTCTGAAGAAGGAAATTCAAGAATTACTTGCTTCTTGGAGGCCTTATTTTGAGGCTTCCTCCTGCATCTTCATTTATGCTCCTTCAAACAATCGTCAACTGCTTTTTAATGGGGAAAAGGCGTATTTCAGTAACCAGACTGCTGCTCGAAATGTTCCATTGACTGTTCGAAGGCCTACATTCAAGGAAGCCCAGCGTATATATAACCAATTGACACAAGTTGCCTATGATATGGATGAGACGGAATCTCCAGAAAGCATCAAAGATGATTCACTTTTAAGGTTAAGCACTATTAGCATCAACAGCCCAGAGTCCAGCAAGGTGGGCACAGAGGACAACTTGGAGAGAAGGGTAGCCACTGAAGCATGTTCAAGTAACAAAAAATCTGATGACATGCCCATATCAAGTGAGAGTGAGCATGAATTTACTGGTTCATCAACACCTTTACATGAAGCAGCAAAGTCTGGAGATTGTCATAAAGTCTTGGAACTCCTAGAGCAGGGTTTGGATCCTTGCATTATAGATGAAAGGGGGAGGACCCCATATATGCTGACAACTGAGAAGGAAGTCAGGAATACTTTTAGACGGTTCATGGCCTCCAACCTGGACAAGTGGGATTGGCATGCTGCAAGAGTGCCCAGTGCATTGACAAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCAGATAAAGATGCAAAGAGGAAAGCAAGATCAAAAGAGCTGAAGAAACTGCGGAAAGCAAAAGAAAAGAAGGCTCAGGCTCAGGCTGCCTTAGCCCAGAATTCCTCAACAGTTTCAGAGAATCAAGGAGCTAAGCTGGTTTCAGTTCTCAAGGGACAGCCTCAATCTAGTAGCACCATATCCAGAGAGGAGGAACTGAAGAGAGCAGCTACTGCTGAGAGGGAAAAGAGAGCAGCAGCTGCTGAGAGGAGAATAGCAGCAGCTGCATCCCTCAATGCTCAAGGGCCTGGTACAACCATTGGACCAAGTAGTTCACAACCAAAAAGTGGGATAGCATCTGACATAAACTGCTCCTACTGTTATGCATCATTAGCTGGTAAAATCCCGTTTCACAGGTATAATTACAAATATTGCAGCACAACATGCATGCATGTACACAAAGAGATACTTGAGGATGGATAA 2007 0.4449 MAMAKGNQQQEKRHRSIFDLPTTFLYSCRLLPSSSSSSYSANLFSETKAASPSSTLETLDESKKLEHSANTSLSRWSCNTCKSEFDSLQDQRSHFKSDVHRFNVKLSIAGKGIVKEEDFDELTADTLFKDYDISSISGSEDEVDKRCWAQNDMHKGSDDNVKRKLFIQLQTGEKVSLWKCLVLDESENISYENDPGCCMPCLKESDVIEKLKTVIHEPRDNTHLRVVLLASGGHFAGCVFDGNSVVAHRTFHRYVVRAKAGKKQSSKDAGGRAAHSAGASLRRYNELALKKEIQELLASWRPYFEASSCIFIYAPSNNRQLLFNGEKAYFSNQTAARNVPLTVRRPTFKEAQRIYNQLTQVAYDMDETESPESIKDDSLLRLSTISINSPESSKVGTEDNLERRVATEACSSNKKSDDMPISSESEHEFTGSSTPLHEAAKSGDCHKVLELLEQGLDPCIIDERGRTPYMLTTEKEVRNTFRRFMASNLDKWDWHAARVPSALTKEMEESQAAKQADKDAKRKARSKELKKLRKAKEKKAQAQAALAQNSSTVSENQGAKLVSVLKGQPQSSSTISREEELKRAATAEREKRAAAAERRIAAAASLNAQGPGTTIGPSSSQPKSGIASDINCSYCYASLAGKIPFHRYNYKYCSTTCMHVHKEILEDG* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0723 668 Pfam Bacteroidetes VLRF1 release factor 226 362 IPR041175 -
Vvi15g0723 668 ProSiteProfiles Ankyrin repeat profile. 431 463 IPR002110 GO:0005515
Vvi15g0723 668 MobiDBLite consensus disorder prediction 391 439 - -
Vvi15g0723 668 Gene3D - 397 523 IPR036770 -
Vvi15g0723 668 Coils Coil 577 597 - -
Vvi15g0723 668 ProSitePatterns Zinc finger C2H2 type domain signature. 78 100 IPR013087 -
Vvi15g0723 668 Pfam Vms1-associating treble clef domain 630 663 IPR041540 -
Vvi15g0723 668 MobiDBLite consensus disorder prediction 510 524 - -
Vvi15g0723 668 Coils Coil 525 552 - -
Vvi15g0723 668 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 3 667 IPR047139 -
Vvi15g0723 668 SUPERFAMILY Ankyrin repeat 433 487 IPR036770 -
Vvi15g0723 668 MobiDBLite consensus disorder prediction 396 411 - -
Vvi15g0723 668 MobiDBLite consensus disorder prediction 505 553 - -
Vvi15g0723 668 ProSiteProfiles Ankyrin repeat region circular profile. 431 457 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0723 12 536 C2H2 Transcription Factor Family AT1G01930 58.704 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0723 K26089 - vvi:100254117 1199.11