Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0721 ATGGAGGCACAACCGCTTCGGTGGACGAGCTGGGACACGGCATCACCATCGATTAAGCTTGGTCTTGGGATTGGTGTTGGGTCTGGGCAGAGCACTGTGATCAAGCAAGGAAAGTCTGGGTTCACGCCTGCACAGTTGCGTGAGCTTGAGCAGCAATCTCTCATTTCGAAGTACATGGTAGCTGGTCTCCCTGTTCCTGTTCATCTTGTTCTTCCAATTTGGAAGAGTGTGGCAAGCTCTTTTGGGTCCACTGACGGTGGGATTTATAAGCAATATCCAAGTTTCATAGGTTTCAGTCCTCAGGGATTTGATTATAGGAACGTCATGGATCCTGAACCAGGAAGGTGTAGGAGAACAGATGGGAAGAAATGGAGGTGCAGTAAGGATGTGGTTCCAGACCAGAAGTACTGTGAGCGGCACATGCACCGTGGCCGCCAGCGTTCAAGAAAGCCTGTGGAAGCTCCTGCAATTGCTTCTCATGTTACAAGACCAACCTTCAATTCGAGTATGGAGTCCGAGAATTCAAAAACCGATCTCACCATTGCAGTCCCCCTAAGTCTTCAACTCATGGCCCCCTCTTCCAATAATACCAGCACTGGCAATAACACTGCCACCACCACCACCACCACCAACAACAACAATAATCAAAGAGAGACCAATTTTAGTGGAAATAAACAGACCTCTGCTACCACTGCCGCTGCCATTAGCGACAAAGAAAGGAACTACTTTAATGGCAACAAAAACTTCAACACTACGTCATTGGCCTTAGCAGCCATTACCAAGAATGAAAGCAGTGACAATGCTAATGACAGCAAAGACTTTACCACCATTATGAACATGGCTGTTTCCACCACCTCCAACAACAACAGCAAAAGGAAAAGAACTGATAACATGGATGAGGAAAATGGTCGCAACCGTGCCAGTGACAACATCAACAGAAGCAGAAACAATGGAAACGACAATAATGTTGGTAGTAATGTGTCTCCAGGATTGGACTTCTCCCCTAAGAGTGTTCTTCAAGTTATGGGTTGCAGTAGCTCATGCTTCGATTACAGAAACTATGCAGAACCTGAACCGGGGAGATGCAGAAGAACAGATGGGAAGAAATGGCGATGTAGCAGGGATGTTGTGCCTGATCAGAAATATTGTGTCCGGCACATGCACAGAGGTGCCAAAAAACATGTTGGAGTCTCTCAATCAGTTGCAGTTTCAGCTGCCATTCATAGTAATTGCCGTCCCCCTACCATACCCAACAAAACTCGCATTTCCATAAATTTGAACACCAATCTCTCCATCTCAATCCCAGCAAATCCCCAAACAATATCCCATGACGGAGAAAGTCCTACTGCCAGCAGCAGCAGCGAAACCACAATCACCAATTAA 1383 0.4657 MEAQPLRWTSWDTASPSIKLGLGIGVGSGQSTVIKQGKSGFTPAQLRELEQQSLISKYMVAGLPVPVHLVLPIWKSVASSFGSTDGGIYKQYPSFIGFSPQGFDYRNVMDPEPGRCRRTDGKKWRCSKDVVPDQKYCERHMHRGRQRSRKPVEAPAIASHVTRPTFNSSMESENSKTDLTIAVPLSLQLMAPSSNNTSTGNNTATTTTTTNNNNNQRETNFSGNKQTSATTAAAISDKERNYFNGNKNFNTTSLALAAITKNESSDNANDSKDFTTIMNMAVSTTSNNNSKRKRTDNMDEENGRNRASDNINRSRNNGNDNNVGSNVSPGLDFSPKSVLQVMGCSSSCFDYRNYAEPEPGRCRRTDGKKWRCSRDVVPDQKYCVRHMHRGAKKHVGVSQSVAVSAAIHSNCRPPTIPNKTRISINLNTNLSISIPANPQTISHDGESPTASSSSETTITN* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0721 460 ProSiteProfiles WRC domain profile. 356 400 IPR014977 -
Vvi15g0721 460 ProSiteProfiles WRC domain profile. 110 154 IPR014977 -
Vvi15g0721 460 MobiDBLite consensus disorder prediction 292 308 - -
Vvi15g0721 460 ProSiteProfiles QLQ domain profile. 40 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi15g0721 460 SMART QLQ_2 39 75 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi15g0721 460 MobiDBLite consensus disorder prediction 435 460 - -
Vvi15g0721 460 MobiDBLite consensus disorder prediction 282 332 - -
Vvi15g0721 460 Pfam QLQ 41 74 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi15g0721 460 Pfam WRC 111 153 IPR014977 -
Vvi15g0721 460 Pfam WRC 357 393 IPR014977 -
Vvi15g0721 460 MobiDBLite consensus disorder prediction 309 332 - -
Vvi15g0721 460 PANTHER GROWTH-REGULATING FACTOR 5 36 263 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi15g0721 460 MobiDBLite consensus disorder prediction 192 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0721 Vvi-Chr15 15941485 15945103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0721 44 393 GRF Transcription Factor Family AT2G45480 33.333 2.13e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi15g0721 WRC 3.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0721 - - vvi:100242152 830.476