Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0720 ATGCGTGAAGAACCCTCTCAAAAACAGCAGAAACAATGGTCTTTAGACGACTTCGAGATCGGAAAACCTCTCGGCAGAGGCAAATTCGGCAGAGTCTATCTCGCCCGAGAAATCAAGAGCAAGTATGTAGTGGCATTAAAGGTGATATTCAAGGCGCAGATTGAGAAGTACAGGCTTCATCACCAGCTGAAGAGAGAGATGGAGATTCAGACCAGTCTTTGTCACCCAAACGTACTGCGTCTCTATGGTTGGTTTCATGATTCCGAGAGAATCTTTTTGATTCTTGAATACTGTTATGGGGGAGAGCTCTATAGGGAGTTAAGGAAGACTGGTTATCTCACTGAAAAGCAAGCCGCCACGTACATTGCAAGCCTCACACAAGCATTAGCATACTGCCATGAGAAGCATGTGATTCACAGGGATATCAAGCCTGAGAATTTGTTGCTAGATCACGAGGGTCGACTGAAAATTGCGGACTTTGGATGGTCTGTACAATCAACAAACAAGAGACGAACCATGTGTGGAACTTTGGACTATCTTGCACCAGAAATGGTGGAGAACAAAGCTCATGACTATGCAGTTGATAACTGGACTCTGGGAATCCTATGTTATGAGTTCCTGTATGGTGTCCCTCCATTTGAGGCAGAAAGCCAGAGTGATACATTTAAACGGTGA 675 0.4474 MREEPSQKQQKQWSLDDFEIGKPLGRGKFGRVYLAREIKSKYVVALKVIFKAQIEKYRLHHQLKREMEIQTSLCHPNVLRLYGWFHDSERIFLILEYCYGGELYRELRKTGYLTEKQAATYIASLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSTNKRRTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGVPPFEAESQSDTFKR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0720 224 SUPERFAMILY Protein kinase-like (PK-like) 9 223 IPR011009 -
Vvi15g0720 224 ProSiteProfiles Protein kinase domain profile. 18 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0720 224 FunFam Aurora kinase A 10 101 - -
Vvi15g0720 224 SMART serkin_6 18 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0720 224 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 224 IPR030616 GO:0004672
Vvi15g0720 224 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Vvi15g0720 224 PIRSF ILK 1 224 - -
Vvi15g0720 224 Pfam Protein kinase domain 18 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0720 224 CDD STKc_Aurora 17 224 - -
Vvi15g0720 224 Gene3D Phosphorylase Kinase; domain 1 5 100 - -
Vvi15g0720 224 FunFam Serine/threonine-protein kinase ark1 10 224 - -
Vvi15g0720 224 Gene3D Transferase(Phosphotransferase) domain 1 101 224 - -
Vvi15g0720 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0720 Vvi-Chr15 15935870 15938659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0720 6 224 CBL-interacting serine-threonine protein kinases AT2G26980 37.778 8.90e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vvi15g0720 Pkinase 1.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0720 K08850 - vvi:100265961 466.848