Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0719 ATGAGTTTCCTCAAAGGCATCATTGATTCTCTGGGCTCCATCTTCTCTGATTCTACTTCTCCGGACGAGGCTCAGTCAAGCCCTAATTTTTCCGATAATGGGGCGATGGACGGCGTCGTCGGAACTGGCGTTTCGAACCAGCGGATTGCGTATAAGCTAAAAGGCTATTACGATTTGGCGACGGAGGAAATTGCCAAGGCTGTTAGGGCAGAAGAGTGGGGTTTGGTCGATGATGCAATTGTTCATTACAAGAATGCGCAGCGTATATTGATCGAAGCCAGTTCGACTAGTACACCTTCTTTTATCAGTTCTAGTGAACAAGAGAAGGTGAAATCTTATCGTCAAAAGATATCAAAATGGCAGGGTCAAGTTGCAGAGAGACTTGAAATTTTAATCAGGCGAGCAGGTGGCACATCCACAAACAAGAACACCTTAGCTGACACAAAACCTGCTACAACTTCTTCAACAAAATCTAATGCTAGAACAGATGTATTACAAAAGTCTCCACTTACCAATAGGCGCAGCCCCATTATGAGGAGTCAGTCAGATAAAGTTGTAAGCTCAAAACCTGTACAAGAATCTGGTCATGGCTATGATGCAAAATTGGTTGAAATGATAAACACTGTGATTGTGGACAGAAGTCCTTCTGTTAAATGGGATGATGTTGCTGGTCTTGAAAAGGCAAAGCAGGCATTATTGGAAATGGTTATTCTACCAACTAAAAGAAAAGACCTGTTCACTGGCCTTAGAAGGCCTGCTAGAGGTCTACTTCTCTTTGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAGGCTGTTGCTTCAGAGTCAGCGGCAACATTTTTTAATGTTTCTGCATCTTCCCTTACATCAAAGTGGGTGGGAGAGGGTGAAAAACTTGTCCGGACTCTGTTCATGGTTGCTATTTCCAGGCAACCATCAGTGATTTTCATGGATGAAATTGATAGCATTATGTCAACAAGGATGACAAACGAGAACGAGGCAAGCAGGAGGTTGAAGTCAGAGTTTCTGGTACAGTTTGATGGGGTCACTTCTAATCCTGATGATCTTGTAATTGTAATTGGTGCAACTAATAAACCACAAGAATTGGATGATGCAGTTCTTAGGAGATTGGTAAAGAGAATATACGTACCATTACCAGATGAAAATGTCAGGAGGCTTCTTCTAAAACACAAACTTAAAGGCCAAGCATTTTCCTTACCTGGTGGAGATCTAGAAAGACTTGTGCAGGAGACAGAAGGATATTCTGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCTGCGATGATGCCAATTAGAGAGCTGGGTACAAATATTCTGACTGTCAAAGCTAATCAGGTAAGGCCACTAAGATATGGAGATTTTCAGAAGGCAATGACTGTTATTAGACCCAGCTTACAGAAAGGCAAGTGGCAAGAGCTTGAAGACTGGAACCAGGAATTTGGCTCCAATTAA 1476 0.4268 MSFLKGIIDSLGSIFSDSTSPDEAQSSPNFSDNGAMDGVVGTGVSNQRIAYKLKGYYDLATEEIAKAVRAEEWGLVDDAIVHYKNAQRILIEASSTSTPSFISSSEQEKVKSYRQKISKWQGQVAERLEILIRRAGGTSTNKNTLADTKPATTSSTKSNARTDVLQKSPLTNRRSPIMRSQSDKVVSSKPVQESGHGYDAKLVEMINTVIVDRSPSVKWDDVAGLEKAKQALLEMVILPTKRKDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAATFFNVSASSLTSKWVGEGEKLVRTLFMVAISRQPSVIFMDEIDSIMSTRMTNENEASRRLKSEFLVQFDGVTSNPDDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVQETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQVRPLRYGDFQKAMTVIRPSLQKGKWQELEDWNQEFGSN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0719 491 CDD RecA-like_spastin 221 384 - -
Vvi15g0719 491 MobiDBLite consensus disorder prediction 139 193 - -
Vvi15g0719 491 FunFam AAA-type ATPase family protein 387 469 - -
Vvi15g0719 491 CDD MIT_spastin 53 131 - -
Vvi15g0719 491 PANTHER AAA DOMAIN-CONTAINING 60 490 - -
Vvi15g0719 491 ProSitePatterns AAA-protein family signature. 358 377 IPR003960 GO:0005524|GO:0016887
Vvi15g0719 491 SMART smart 53 130 IPR007330 -
Vvi15g0719 491 Gene3D - 387 469 - -
Vvi15g0719 491 Pfam AAA+ lid domain 411 442 IPR041569 -
Vvi15g0719 491 FunFam Spastin, putative 215 398 - -
Vvi15g0719 491 Gene3D - 215 485 IPR027417 -
Vvi15g0719 491 Gene3D - 46 134 - -
Vvi15g0719 491 SMART AAA_5 252 388 IPR003593 GO:0016887
Vvi15g0719 491 MobiDBLite consensus disorder prediction 139 189 - -
Vvi15g0719 491 Pfam ATPase family associated with various cellular activities (AAA) 256 386 IPR003959 GO:0005524|GO:0016887
Vvi15g0719 491 FunFam AAA-type ATPase family protein 46 135 - -
Vvi15g0719 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 488 IPR027417 -
Vvi15g0719 491 SUPERFAMILY MIT domain 54 118 IPR036181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0719 Vvi-Chr15 15927267 15934930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0719 215 441 Calmodulin-binding Proteins AT3G56690 42.373 6.84e-46 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0719 K13254 - vvi:100264212 947.577