Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0678 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACCGTCAAGTTACCTTCTCCAAACGCAGAAATGGTCTGCTCAAGAAGGCCTATGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAGCCGCGGCAAGCTCTATGAGTTTGGCAGTGCTGGTACTACCAAAACCCTAGAGCGGTATCAACGCGTCTGCTACACTCCTCAAGACAACAATATGGAATGTGAAACACAGAGTTGGTACCAAGAGGTGTCAAAGTTAAAGGCAAAATATGAATCTCTCCAGCGCACCCAAAGGCATTTGCTTGGAGAAGATCTTGGACCGCTGAGTGTCAAAGAACTGCAAAATCTTGAGAAACAGCTTGAAGGAGCTCTAGCACAAGCTAGGCAAAGGAAGACCCAAATGATGATAGAACAAATGGAAGACCTTCGCAGGAAGGAGCGACAGCTTGGGGATCTAAACAAACAGCTCAAACTTAAGCTTGAGGCCGAGGGACAAAGTCTTAAAGCCATTCAAGGTTCATGGAACCCCAGTACTGCAACTGCTGGAAACAGCAGCTTCCCTGTGCATCCTTCCCAATCTAACCCAATGGACTGCGAACCCGAACCCATCTTGCAAATTGGGTACCATCACTATGTTCCAGCAGAAGGGCCGTCTGTTTCAAAGAGCATGGCTGGTGAGAGCAACTTCATCCAAGGGTGGGTTCTTTGA 735 0.4762 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRVCYTPQDNNMECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTQMMIEQMEDLRRKERQLGDLNKQLKLKLEAEGQSLKAIQGSWNPSTATAGNSSFPVHPSQSNPMDCEPEPILQIGYHHYVPAEGPSVSKSMAGESNFIQGWVL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0678 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g0678 244 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vvi15g0678 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Vvi15g0678 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi15g0678 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vvi15g0678 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0678 244 Coils Coil 119 171 - -
Vvi15g0678 244 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Vvi15g0678 244 FunFam MADS-box transcription factor 1 13 88 - -
Vvi15g0678 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0678 244 MobiDBLite consensus disorder prediction 180 201 - -
Vvi15g0678 244 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g0678 244 MobiDBLite consensus disorder prediction 180 206 - -
Vvi15g0678 244 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi15g0678 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g0678 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g0678 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0678 Vvi-Chr15 15406916 15424196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0678 1 244 MADS-box Gene Family AT2G45650 69.565 6.57e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi15g0678 K-box 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0678 K09264 - vvi:100232868 489.96