Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0675 ATGGTGAGAGGAAAGACTCAAATGAGGCGTATAGAAAACGCCACAAGTCGGCAAGTCACCTTTTCTAAGCGGAGGAATGGCCTCTTCAAGAAGGCCTTCGAGCTCTCCGTGCTCTGTGATGCTGAGGTTGCGCTCATCATTTTCTCTCCAAGAGGGAAGCTCTATGAATTTTCCAGTTCCAGGTATGCTTTCCTTCCTTCTTCCTTCTCCTTTTCACATTAA 222 0.4685 MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRYAFLPSSFSFSH* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0675 73 FunFam Agamous-like MADS-box protein AGL13 13 66 - -
Vvi15g0675 73 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Vvi15g0675 73 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0675 73 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi15g0675 73 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi15g0675 73 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Vvi15g0675 73 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Vvi15g0675 73 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi15g0675 73 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Vvi15g0675 73 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g0675 73 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi15g0675 73 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0675 Vvi-Chr15 15375963 15376184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0675 1 60 MADS-box Gene Family AT2G45660 91.667 8.58e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0675 SRF-TF 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0675 - - vvi:100232995 118.627