Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0668 ATGGATGACTATGGTTCTTCATCTTCATACCCATACAATAATTCCTATGGATACCCGCATCATCCACCTCCTTCAAATCATCCATACCCACCTCCGAATTCAGATCCATATGCTCCTCCACCACCTCCGGATTTTGCATACCCGTACAATTCTTCAAATTCTTTCACGTACCCACAACCTATGTACCCATCAGTTCCAAGTCCTTCGTTACCACCTTCTTCAGCCCACCATTCAGGGCCTTTAGAGTATTATCACCCTCCGCCACCTCAGTCAGCTCCAATTCCCTATCCATACCCTTATCCAGTTTCGCCAATGCCCCTTAGTTCTCCTCAGCCAAGCCTTCAACAGCATAGTAGTTTCCAATATGGGTCATCCCATTACCACTACCAACAACCTGAGTCATACCCACCTAGTGAAACCTATTCTCATGCGCCTGGCCGGGCCAATAGCTTCTCTAGTCATAGTTCGGGGTCTTTTGGAATGGGATCATCACCGAATCATGAAGTTGTTCATGATTCCTCACCTTTATACCCTCCTATTTATCCCCAGTTGGACGATCATTTAAGCAATCTGCATTTGTCTGATAATCATGCATCTGCCCCTGCTTCTCCCTCAGCGCCTTCAGTGCGGGATTCTCCTCCAAGGTATCCGAGTTTGAGTGGAAGTAACTCATTTTCCAGTGGTTGGGAGTCGTACTCAGGTAGGCAGGATTCCTCTCTTCATTCTGCCTATTACCATTCAAGCTCGTTTAATGGCTCGCAGCATAGTCAGAATTTGCAGATTGTGCCCTCTAAAGGGTCCTTGAAGGTTCTGCTTTTACATGGGAATTTAGATATTTGTGTTAATGAAGCAAAAAACCTTCCAAACATGGACATGTTTCATAAAACTTTAGGAGATGTTTTCGGGAAACTACCTGGAAATGTGAGTAACAAAATAGAGGGGCATATGCCTCATAAGATCACTAGTGATCCATACGTCTCAATTTCAGTATCAGGTGCTGTAATTGGAAGGACTTTTGTAATTAGTAACAGTGAAAATCCCATCTGGAAGCAAAAATTCTATGTTCCTGTTGCACATCATGCTGCTGAGGTACACTTTATGGTAAAAGATAGTGATGTTGTGGGATCACAGCTTATAGGAGTGGTTGCAATTCCAGTGGTACAGATATATTCAGGAGCTAAAGTTGAGGGAACCTTTCCAATCCTCAATAATGGGAAGCAAAGCAAAGCTGGATGTGTCTTAAGCATTTCAATTCAATACATTCCAATAGAGAAACTAAGCATTTATCATCATGGAGTGGGGGCTGGTCCAGATTATCTTGGTGTTCCTGGAACATATTTTCCACTGAGAAGAGGTGGAACAGTTACTCTTTACCAAGACGCCCATGTTCCTGATGGGTGCCTTCCAAGCCCAATGCTTGCTCAGGGGACGCCTTACGTACATGGAAAGTGTTGGCATGACATCTTTGATGCAATATGTCAGGCCCAGCGTCTGATTTACATCACAGGTTGGTCTGTGTGGGACAAAGTTAGACTGGTTCGGGATGCTAGTTCTGCAGCAGAGTACACCCTTGGGGAACTTCTGAAATCGAAGTCACAGGAAGGGGTGAGGGTACTGCTTCTTTTATGGGATGATCCTACTTCAAGGAACATTTTGGGTTATAAAACAGATGGAATCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAGCACTCCTCAGTGCAAGTGCTACTTTGTCCCCGCTTTGCTGGAAAACGACATAGTTGGATCAAGCAGAGGGAAGTTGAAACAATCTATACTCACCATCAAAAAACTGTTATCCTGGATGCTGATGCTGGTTGTAATAGAAGGAAAATCATAGCTTTTGTTGGAGGACTTGATCTATGTGATGGGCGATATGATACTCCTCATCATCCTCTATTTAGGTCACTGGAAAAGGAGCATAAAGATGACTATCATAACCCAACTTTCACGGGGAATGTTGCTGGTTGTCCCAGAGAACCATGGCATGACATGCACTGTAAAATAGATGGTCCCGCAGCATATGACGTTCTGACCAACTTTCAGGAGCGCTGGTTAAAAGCTGCTAAACCCCATGGGATAAAAAAATTGAAGATGTCCTATGATGATGCTCTGCTCAAGATAGAAAGAATTCCTGACATCCTTGGGATTTCTGATGCTCCTTGCCTTGGTGAGAATGATCCTGAGGCTTGGCATGTTCAGGTTTTTCGCTCAATTGATTCAAATTCTGTTAAGGGCTTTCCGAAGGACTCAAGGGATGCTTTACAAAAGAACCTGGTATGTGGGAAGAATGTATTGATTGACATGAGCATACATACAGCATATGTAAAGGCGATTCGTGCTGCCCAGCATTTTATCTATATTGAAAACCAGTATTTCATTGGGTCTTCATTCAATTGGACTTCTTACAAGAACTTAGGTGCCGACAATATAATTCCAATGGAAATTGCTCTTAAAATTGCCAATAAAATCAGAGCCAATGAGAGATTTGCTGCATATATAGTTGTTCCAATGTGGCCTGAGGGAGTTCCAACAGGTGCCGCTACACAGAGGATTCTGTTTTGGCAGCACAAGACAATGCAAATGATGTACGAAACCATTTACAAGGCTTTAGTAGAGGTTGGACTTGAGGAAGCATTCACTCCACAAGACTATTTGAATTTCTTCTGTCTTGGCAATCGCGAAGCTGTAGATGGGAGTGAAACTCCAGGCACTACGAGTCCTACTGCAGCAAACACTCCTCAAGCACACAGTAGGAAGAACCGTCGATTCATGATCTATGTTCATTCAAAAGGCATGATAGTTGATGATGAGTACGTGATATTGGGGTCTGCAAACATCAACCAGCGCTCTATGGAAGGCACTAGAGACACAGAAATTGCAATGGGAGCATACCAACCTCACTATACCTGGGCACGGAAACTGTCTAATCCACGTGGACAGATCTATGGATACAGGATGTCCCTGTGGGCAGAGCATACCGGAACCATTGAGGACTGCTTCGTGGAACCAGAGAGTCTGGAATGTGTAAAGAGGGTTAGGTCCATGGGTGAGATGAACTGGAAACAATTTGCATCGGACGACATATCAGAAATGAGGGGACACCTCCTGAAGTACCCAGTTGAAGTTGATCGAAAGGGCAAGGTGAAGCCCATTCCCAAATGCGAAACTTTTCCAGATGCAGGAGGAAACATCGTGGGATCATTTCTTGCCATTCAGGAGAATCTTACCATTTGA 3264 0.44 MDDYGSSSSYPYNNSYGYPHHPPPSNHPYPPPNSDPYAPPPPPDFAYPYNSSNSFTYPQPMYPSVPSPSLPPSSAHHSGPLEYYHPPPPQSAPIPYPYPYPVSPMPLSSPQPSLQQHSSFQYGSSHYHYQQPESYPPSETYSHAPGRANSFSSHSSGSFGMGSSPNHEVVHDSSPLYPPIYPQLDDHLSNLHLSDNHASAPASPSAPSVRDSPPRYPSLSGSNSFSSGWESYSGRQDSSLHSAYYHSSSFNGSQHSQNLQIVPSKGSLKVLLLHGNLDICVNEAKNLPNMDMFHKTLGDVFGKLPGNVSNKIEGHMPHKITSDPYVSISVSGAVIGRTFVISNSENPIWKQKFYVPVAHHAAEVHFMVKDSDVVGSQLIGVVAIPVVQIYSGAKVEGTFPILNNGKQSKAGCVLSISIQYIPIEKLSIYHHGVGAGPDYLGVPGTYFPLRRGGTVTLYQDAHVPDGCLPSPMLAQGTPYVHGKCWHDIFDAICQAQRLIYITGWSVWDKVRLVRDASSAAEYTLGELLKSKSQEGVRVLLLLWDDPTSRNILGYKTDGIMQTHDEETRRFFKHSSVQVLLCPRFAGKRHSWIKQREVETIYTHHQKTVILDADAGCNRRKIIAFVGGLDLCDGRYDTPHHPLFRSLEKEHKDDYHNPTFTGNVAGCPREPWHDMHCKIDGPAAYDVLTNFQERWLKAAKPHGIKKLKMSYDDALLKIERIPDILGISDAPCLGENDPEAWHVQVFRSIDSNSVKGFPKDSRDALQKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSFNWTSYKNLGADNIIPMEIALKIANKIRANERFAAYIVVPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEEAFTPQDYLNFFCLGNREAVDGSETPGTTSPTAANTPQAHSRKNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSNPRGQIYGYRMSLWAEHTGTIEDCFVEPESLECVKRVRSMGEMNWKQFASDDISEMRGHLLKYPVEVDRKGKVKPIPKCETFPDAGGNIVGSFLAIQENLTI* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0668 1087 CDD C2_plant_PLD 269 421 - -
Vvi15g0668 1087 MobiDBLite consensus disorder prediction 1 15 - -
Vvi15g0668 1087 SUPERFAMILY Phospholipase D/nuclease 443 698 - -
Vvi15g0668 1087 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 273 419 IPR035892 -
Vvi15g0668 1087 SMART C2_3c 276 398 IPR000008 -
Vvi15g0668 1087 FunFam Phospholipase D delta 475 713 - -
Vvi15g0668 1087 Pfam Phospholipase D Active site motif 600 634 IPR001736 GO:0003824
Vvi15g0668 1087 Pfam Phospholipase D Active site motif 934 960 IPR001736 GO:0003824
Vvi15g0668 1087 MobiDBLite consensus disorder prediction 1 231 - -
Vvi15g0668 1087 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 933 960 IPR001736 GO:0003824
Vvi15g0668 1087 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 599 634 IPR001736 GO:0003824
Vvi15g0668 1087 MobiDBLite consensus disorder prediction 82 108 - -
Vvi15g0668 1087 Gene3D C2 domain 270 413 IPR035892 -
Vvi15g0668 1087 SMART pld_4 599 634 IPR001736 GO:0003824
Vvi15g0668 1087 SMART pld_4 933 960 IPR001736 GO:0003824
Vvi15g0668 1087 Pfam C2 domain 275 401 IPR000008 -
Vvi15g0668 1087 MobiDBLite consensus disorder prediction 17 47 - -
Vvi15g0668 1087 PANTHER PHOSPHOLIPASE D 267 1078 IPR015679 -
Vvi15g0668 1087 SUPERFAMILY Phospholipase D/nuclease 768 1019 - -
Vvi15g0668 1087 Pfam Phospholipase D C terminal 1007 1077 IPR024632 -
Vvi15g0668 1087 Gene3D Endonuclease Chain A 748 984 - -
Vvi15g0668 1087 MobiDBLite consensus disorder prediction 109 170 - -
Vvi15g0668 1087 ProSiteProfiles C2 domain profile. 255 399 IPR000008 -
Vvi15g0668 1087 MobiDBLite consensus disorder prediction 215 231 - -
Vvi15g0668 1087 Gene3D Endonuclease Chain A 475 714 - -
Vvi15g0668 1087 FunFam Phospholipase D 747 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0668 Vvi-Chr15 15273937 15289281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0668 73 1087 Phospholipase D Gene Family (Wang group) AT2G42010 69.631 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0668 K01115 - vvi:100250490 2034.61