Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0656 ATGGGGGTGGGAGGGAGTTTTTGGGAATTACTGAAACCCTATGCCCGACCTGAAGGCTTCGATTACATCCGAAACAAACGGGTGGCTGTGGATCTCTCTTTCTGGATAGTCCAACAAGAAACCGCCACTAAAGCCAATGTTCGGAACCCTCACCTCAGACTCACTTTCTTCCGTACGATAAATCTCTTCTCCAAGTTTGGCGCGTTTCCGGTGTTTGTTGTGGATGGAACTCCGTCGCCCTTGAAATCTCAGGCAAGGATTGCACGGTTCTTCCGTGGTTCTGGAATTGATTTGTCGGGTTTGCCGGTGGTTGAGGAGGGTGTTTCGGTGGAAAGGAATGCCGAATTCTCAAGACGCGTTCAAGAGTGTGTTGAACTGCTTGAACTTCTTGGTATTCCTGTACTGAAAGCAAGAGAAGAGGCTGAAGCTCTTTGTGCCCAGTTAAATAGTGAAGGCCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCTAAATGTGTGATAAAATGCCTCCGACCCAATTGCAAGGAACCCTTGGAATGCTACCACATGTCAGATATTGAATCTGGTCTTGGCCTGAAGAGGAAACACTTGATAGCCATCTCTCTTTTGGTTGGCAATGACTATGATTTAAATGGGGTACAAGGGATCGGGCTTGACACTGCTGTTCGTTTTGTCCAAGGCTTTAGTGAAGATGAGATTCTGAATAGGTTACAAGAAAAAGGCAATGGGGCAACTGTGTTTGATGGGGCTGTTAAATCTATGGATGATTCTATTCCCTGTTTGGATGAGAAATCACCAAGGCCAAAAGTTCCTCATTGTTCCACCTTTCCTAGGAAGGGCTGCTTGGAAAAACCAGAGGGGTTTGCATGTGATTGCTCCACCTCTGACGCGGACCATAAGGAAAAGGAACAAAAGAAGCAAGAAATGGATGATTCCATACCCAGTTTAGATGAGAGGTCACCAAGGCCAAAAGTTCCTCATTGTTCCATCTGTGGGCATCCAGGTCGCAAGAAATCTCATCTCAAGTTTTCTTGTGATTTTTGTGGCACCTTTCCTAGGAGGGGCTGCTTGGAAAAACCAGAGGGGTTTGTATGTGATTGCTCCACCTGTGACATGGATCGAAAAGAAAAGGCACAGAAGAAGCAAGAAAATTGGCAGTTAAGGGTTTGCAAAAAGATTGCCATGGAGCAGAATTTCCCAAATAATGAGATTATTGAATTGTATTTGAGCAATAACCATGGGCATTTTACTGAAAAGGATGGACCTCATATATCATGGGAAAGCCCAAAAACAGAGGTGCTTGTTGATTTCTTAGCTTATCATCAGCATTGGGAGCCGTCTTATATTCGTCAAAGGATGCTTCCTATGTTGTCTACCATCTTCTTCCGAGAAAAGGCTTTGAATCCAACGAATACATTGCTATATGGGCAGTATGAGTTTGATTCTATTCAGCGTGTGAAGGTAAGGTTCGGGCATCAATTTTTTGTGGTCAAATGGAAGAAGGCTGTACATGCAATGGCTAGTGTTGCCTATACAATCCCTGGTGACTCTGATATAGAGCAAGAGAAGCTAACAGAAGTTGATGAATCCATTGATCTATTGGATGAGTGCAATGTTCCTCAGATTCACGTTGATGATGGGTGCTGGTTTTTGTTGACTGATGAAAATATGGACTTAGTTCGGGCTGCTTTTCCAGAGGAAGTTAACAGATTTCTGCTGGAAAAGGAACTGAAAGAATCAAAAAGAAGAAATAAGTCTGGTTTAAGATCTGAAGGGGTGGAAGAAATGCCAGATTCGCCAAAATCAAAAGGAGTCCAGCTAAGTATTACTGAATTTTACCGTTCAGCAAAAGTAATTTTTCATGAAAAACCAGAAGATTCAGCTGGGAATTCAGATGCCCAGGGTAGAGAGACCTCAACTGAAAAGAGAAAAGCCTCGGATTCAAAGCTTTCCAAGTCTGTAAGACGACGCCTTTTGTTTGGTTAG 2004 0.4366 MGVGGSFWELLKPYARPEGFDYIRNKRVAVDLSFWIVQQETATKANVRNPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRGSGIDLSGLPVVEEGVSVERNAEFSRRVQECVELLELLGIPVLKAREEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCLRPNCKEPLECYHMSDIESGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDTAVRFVQGFSEDEILNRLQEKGNGATVFDGAVKSMDDSIPCLDEKSPRPKVPHCSTFPRKGCLEKPEGFACDCSTSDADHKEKEQKKQEMDDSIPSLDERSPRPKVPHCSICGHPGRKKSHLKFSCDFCGTFPRRGCLEKPEGFVCDCSTCDMDRKEKAQKKQENWQLRVCKKIAMEQNFPNNEIIELYLSNNHGHFTEKDGPHISWESPKTEVLVDFLAYHQHWEPSYIRQRMLPMLSTIFFREKALNPTNTLLYGQYEFDSIQRVKVRFGHQFFVVKWKKAVHAMASVAYTIPGDSDIEQEKLTEVDESIDLLDECNVPQIHVDDGCWFLLTDENMDLVRAAFPEEVNRFLLEKELKESKRRNKSGLRSEGVEEMPDSPKSKGVQLSITEFYRSAKVIFHEKPEDSAGNSDAQGRETSTEKRKASDSKLSKSVRRRLLFG* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0656 667 Gene3D - 2 197 - -
Vvi15g0656 667 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 618 IPR006084 -
Vvi15g0656 667 SMART xpgn3 1 96 IPR006085 GO:0004518
Vvi15g0656 667 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Vvi15g0656 667 MobiDBLite consensus disorder prediction 589 611 - -
Vvi15g0656 667 MobiDBLite consensus disorder prediction 589 604 - -
Vvi15g0656 667 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
Vvi15g0656 667 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Vvi15g0656 667 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Vvi15g0656 667 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Vvi15g0656 667 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Vvi15g0656 667 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vvi15g0656 667 CDD PIN_GEN1 2 202 - -
Vvi15g0656 667 Gene3D - 198 258 - -
Vvi15g0656 667 SMART xpgineu 128 198 IPR006086 GO:0004518
Vvi15g0656 667 MobiDBLite consensus disorder prediction 629 667 - -
Vvi15g0656 667 MobiDBLite consensus disorder prediction 306 330 - -
Vvi15g0656 667 MobiDBLite consensus disorder prediction 629 660 - -
Vvi15g0656 667 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 469 IPR036279 -
Vvi15g0656 667 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Vvi15g0656 667 FunFam Flap endonuclease GEN-like 1 198 255 - -
Vvi15g0656 667 FunFam Flap endonuclease GEN-like 1 2 197 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0656 1 246 Core DNA Replication Machinery Family AT5G26680 30.741 2.54e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0656 K15338 - vvi:100259113 1354.73