Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0655 ATGGGCAGTGAGAAAGCTTCTTCATCATCAGTTACTCCTACTGAAGAATTTAAAGGGCACAGAGACATCTGTGTTTTGGTTGTGGATTGTGATCCCACCTGCCTCATGATCGTTTCAGGAATGCTCAGAGCCTTGACATATGAAGTTTTGACTGTTGATCGAGCTGTGGATGCTTTGGCAATGACACTAGAAGGAGGGTGTGGAGTTGACCTCGTTATGACGGAGCTTCACATGCCTGACATGTACGGACTCGACCTTCTTGATGAAATCAGAAGAACTTCCAAATTGCCTGTTGTCATTATGTCTGCTGATTCGAATGAGGATGTGATGTTAAAAAGTCTTAGAAGAGGCGCTGAGTACTATCTCGTGAAGCCAGTTTTAATGGAGGATGTGACGAACTTTTGGCAGTATGTCTTTAAGAGAAGACGACAGAAACTCAGCCTAGAAACTGAAAAGAAGGGGAGTAGTAATGTAACTATTGTTGAGGTTGTTGAATCATTCGAGGAAGAAGACGAATCGGATGGAGATGGAGATGGAGATGGAGATGAATATAGTGCAGTGAGTGATGGAGAGAAGAGCCATCAAGAGTCCGCTGTAGAGACCAGGAAAGAAGAGGAGGAAGATACCCTGACTTCACCCATGCCCAAGAAGCCAAAGCTGAATATTGCTGGAAGCTCTGCCTCTGGAACTGCAGACAGTGGGTCGGGTTTGTGCACCAACCCCATTGAAGACGAACAGCTCATACCGCCCCCACAACCATGGCTGCCGCCACCACCACAGGAGCAGGGAACAGATAAGAAATCTGAGGCTGAAACAGAAGATGATCATGAGGGGTCCGATATGGCGAAAGGCGGCGACCAACTGTTCCCCAAATAG 876 0.4692 MGSEKASSSSVTPTEEFKGHRDICVLVVDCDPTCLMIVSGMLRALTYEVLTVDRAVDALAMTLEGGCGVDLVMTELHMPDMYGLDLLDEIRRTSKLPVVIMSADSNEDVMLKSLRRGAEYYLVKPVLMEDVTNFWQYVFKRRRQKLSLETEKKGSSNVTIVEVVESFEEEDESDGDGDGDGDEYSAVSDGEKSHQESAVETRKEEEEDTLTSPMPKKPKLNIAGSSASGTADSGSGLCTNPIEDEQLIPPPQPWLPPPPQEQGTDKKSEAETEDDHEGSDMAKGGDQLFPK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0655 291 SMART REC_2 23 135 IPR001789 GO:0000160
Vvi15g0655 291 MobiDBLite consensus disorder prediction 185 213 - -
Vvi15g0655 291 MobiDBLite consensus disorder prediction 246 260 - -
Vvi15g0655 291 Gene3D - 25 221 - -
Vvi15g0655 291 MobiDBLite consensus disorder prediction 223 240 - -
Vvi15g0655 291 Pfam Response regulator receiver domain 25 131 IPR001789 GO:0000160
Vvi15g0655 291 MobiDBLite consensus disorder prediction 264 282 - -
Vvi15g0655 291 ProSiteProfiles Response regulatory domain profile. 24 139 IPR001789 GO:0000160
Vvi15g0655 291 MobiDBLite consensus disorder prediction 166 291 - -
Vvi15g0655 291 SUPERFAMILY CheY-like 22 151 IPR011006 -
Vvi15g0655 291 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 204 IPR045279 GO:0009736
Vvi15g0655 291 CDD REC_typeB_ARR-like 25 139 - -
Vvi15g0655 291 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0655 Vvi-Chr15 15155184 15156278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0655 22 208 Response Regulator Gene Family AT4G16110 36.364 3.51e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi15g0655 Response_reg 1.4e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0655 - - vvi:104881872 535.798