Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0641 ATGGAGGGAAGGGAAGGCATGACTTCAGGAGTTACAGTGATAGGAGCTGAAGCTCCATCCGACTATGAAATGGTGGCTAGAACTGAAAACCCTAGCCAGATTGCTGGATCACCAGCAGTGGATGCATCTCCTGTGAGTGTGGGATTCACAGGAACAGTGGGGAAGAAGAAGAGAGGTAGACCAAGGAAGTACCAACCAGATGGAATGGCTTCCATGACATTGTCTCCAATGCCGATTTCATCTTCAGCTCCACTATCTGGCAACTTCTCATCTGGAAAGCGGGGTAGAGGGCGGCCAGTTGGTTCCGAAAGCAAGCAAAAACAGAAAGTGGGGTCGGAGAATTCAGGCAACTGGTCTGCTATCTCTGATGGTGTAAATTTCACGCCTCATATCATCACTGTTAATGCTGGCGAGGATGTTACCATGAAGCTGATATCATTTTCTCAACAAGGACCTCGGGCTGTTTGTATCCTATCAGCTAATGGAGTGATTTCAAATGTTACACTTCGTCAGCAAGATTCTTCTGGGGGTACTTTGACTTATGAGGGTCGCTTTGAAATACTTTCTTTGACTGGATCATTTGTCCCTACTGAAAGCGGAGGAACAAGGAATCGAGCCGGTGGGATGAGTGTCTCTTTGGCAAGTCCAGATGGTCGGGTTGTTGGGGGAGGAGTTGCTGGACTTCTGATAGCCGCTAGTCCTGTTCTAGTTGTGGTTGGGAGTTTTCTACCAGACAATGCACCGGTACAGAAGCCAAAGAAGATGAAATCTGTTTCTGCACAAACTGCCACTCCAGTTTCTGTGCAAACCACCACCCCACCAGTCGTTACTAGTACACCAAAAGAGGAGGGTGTTGGTGGACAAGGGCAGCCCAGTTCTAGTGCCCTAAAGCCAGACATTGCTTCTCCCTCTTCCATCCAAAGAGAAAATTGGGCCAGTATGCAGTCCATGCAGGATTCGAGAAAGTCAGGAACAGATATCAACATATCTTTGCCTGGAGGTTAA 1005 0.4796 MEGREGMTSGVTVIGAEAPSDYEMVARTENPSQIAGSPAVDASPVSVGFTGTVGKKKRGRPRKYQPDGMASMTLSPMPISSSAPLSGNFSSGKRGRGRPVGSESKQKQKVGSENSGNWSAISDGVNFTPHIITVNAGEDVTMKLISFSQQGPRAVCILSANGVISNVTLRQQDSSGGTLTYEGRFEILSLTGSFVPTESGGTRNRAGGMSVSLASPDGRVVGGGVAGLLIAASPVLVVVGSFLPDNAPVQKPKKMKSVSAQTATPVSVQTTTPPVVTSTPKEEGVGGQGQPSSSALKPDIASPSSIQRENWASMQSMQDSRKSGTDINISLPGG* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0641 334 MobiDBLite consensus disorder prediction 105 121 - -
Vvi15g0641 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 316 IPR039605 GO:0003680
Vvi15g0641 334 Pfam AT hook motif 55 66 IPR017956 GO:0003677
Vvi15g0641 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Vvi15g0641 334 SMART AT_hook_2 55 67 IPR017956 GO:0003677
Vvi15g0641 334 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Vvi15g0641 334 Gene3D - 129 259 - -
Vvi15g0641 334 FunFam AT-hook motif nuclear-localized protein 1-like 129 261 - -
Vvi15g0641 334 MobiDBLite consensus disorder prediction 255 327 - -
Vvi15g0641 334 ProSiteProfiles PPC domain profile profile. 124 263 IPR005175 -
Vvi15g0641 334 MobiDBLite consensus disorder prediction 74 89 - -
Vvi15g0641 334 MobiDBLite consensus disorder prediction 33 121 - -
Vvi15g0641 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 244 - -
Vvi15g0641 334 MobiDBLite consensus disorder prediction 248 334 - -
Vvi15g0641 334 CDD DUF296 128 242 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0641 Vvi-Chr15 15035288 15043183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0641 6 256 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.439 2.46e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0641 - - vvi:100262627 616.305