Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0638 ATGACTGGAAGCAAGGGAGATGGTGGTGGGCCATGCGGTGCCTGCAAGTTTCTTCGGAGAAAGTGCGTGAAAGGCTGTGTTTTTGCTCCTTACTTTGACTCCGACCAGGGCACCGCCCACTTCGCGGCCGTGCACAAGGTGTTTGGTGCCAGCAACGCTTCCAAGCTTCTTACCGGGATTCCCGCTCACAAGCGGCTCGACGCGGTGGTTACTCTCTGCTACGAGGCTCTGGCTAGGCTTAGAGACCCTGTCTATGGCTGTGTTGCTCATGTTTTCACTCTCCAACAACAGGTTATGAATTTGCAGGCGGAGTTGGCCTTCATTCAGGCCCGTCTTTCGACCTTGCAGCGCATTCCTTCTCTGGCACCGCCACCCCTACTGCCTGAAAGTGCACCGCAGCCCAATCTTCAGTCTGACTTTTTTAATGTTCCTCTACAATCACACGAGGCGTCGATGGAAGCTGCGGACTTCTGTAATAATTCAATGGACAGAGAGCTCGAGGATGGTGATCTCCAAACCCTAGCTCAAGAATTTGTCTCTAGATTCTTGCCCGGAGTAAAAGTCCGGGATTCGAGTTCTAACTAA 585 0.5265 MTGSKGDGGGPCGACKFLRRKCVKGCVFAPYFDSDQGTAHFAAVHKVFGASNASKLLTGIPAHKRLDAVVTLCYEALARLRDPVYGCVAHVFTLQQQVMNLQAELAFIQARLSTLQRIPSLAPPPLLPESAPQPNLQSDFFNVPLQSHEASMEAADFCNNSMDRELEDGDLQTLAQEFVSRFLPGVKVRDSSSN* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0638 194 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 139 - -
Vvi15g0638 194 Coils Coil 91 118 - -
Vvi15g0638 194 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Vvi15g0638 194 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0638 Vvi-Chr15 14992324 14994786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0638 1 192 AS2 family AT4G00210 54.587 3.08e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi15g0638 LOB 7.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0638 - - vvi:100248994 379.793