Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0634 ATGGATCCAGTTACAGCCCATGGTCGTCCTCTTCCTCCTCCTTTCCACACCAGAGATCTTCAGCTGCACCACCACCACCAATATCAACACCACCCACAAGCCAATTCTGAAGATGAACAAAGTGGCAGCAGCAGCTTAAACCGAGCACAGAAGCGTGATCGCGATGAAAGTAACGCCACCAACAACACTAGTCCGATTGACGGCAAAGAATTCGGCACATCCAGTGGCGATGGAGAGATCACGAGAAGACCTAGAGGCAGACCAGCTGGCTCCAAGAACAAGCCCAAACCTCCCATCATTATAACACGAGACAGTGCCAACGCCCTCCGATCCCATGTCATGGAAATTGCCACCGGATGCGATATCATGGACAGTCTAAACACCTTTGCTCGGCGGCGACAGAGGGGGATTTGCATTTTAAGCGGCAGCGGAACTGTGACCAATGTCACTCTAAGGCAACCCGCTTCCCCCGGTGCAGTTGTGACCTTACACGGAAGATTTGAGATCTTATCGCTCTCCGGCTCTTTTCTACCCCCTCCAGCACCGCCCGCTGCGTCGGGGCTAACCATATACCTGGCCGGCGGACAGGGGCAGGTGGTGGGTGGTAGCGTGGTTGGGCCGCTACTAGCCTCGGGTCCAGTGGTAATCATGGCTGCTTCATTTGGTAATGCCGCATACGAGAGGCTTCCTCTGGAGGATGAAGAGCCGCAGGTTCCGATTCCCGGAAGCGGCCCTCTTGGATCTCCGGGAATGGTGGGACAACAGCCGCAACAGCAGCAGCAGCAGCAACAGCTTTTGCCAGATCCTAACGCATCTCTTTTTCAAGGGTTACCTCCAAATCTTCTCAATTCATGCCAATTACCTGCTGAGGCCTATTGGGGAACTGCTCGCCCACCCTATTAG 903 0.5449 MDPVTAHGRPLPPPFHTRDLQLHHHHQYQHHPQANSEDEQSGSSSLNRAQKRDRDESNATNNTSPIDGKEFGTSSGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIATGCDIMDSLNTFARRRQRGICILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEEPQVPIPGSGPLGSPGMVGQQPQQQQQQQQLLPDPNASLFQGLPPNLLNSCQLPAEAYWGTARPPY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0634 300 ProSiteProfiles PPC domain profile profile. 106 244 IPR005175 -
Vvi15g0634 300 MobiDBLite consensus disorder prediction 1 101 - -
Vvi15g0634 300 PIRSF ESCAROLA 16 300 IPR014476 GO:0003680
Vvi15g0634 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 110 222 IPR005175 -
Vvi15g0634 300 Gene3D - 109 237 - -
Vvi15g0634 300 CDD DUF296 110 177 IPR005175 -
Vvi15g0634 300 MobiDBLite consensus disorder prediction 234 273 - -
Vvi15g0634 300 MobiDBLite consensus disorder prediction 250 273 - -
Vvi15g0634 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 294 IPR014476 GO:0003680
Vvi15g0634 300 FunFam AT-hook motif nuclear-localized protein 109 236 - -
Vvi15g0634 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 106 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0634 Vvi-Chr15 14939387 14940289 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0634 1 300 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 64.832 1.71e-93 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0634 - - vvi:100245513 541.576