Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0626 ATGGGTCTCTCTCTTTACCTCCTTTCTTTCATCCTCGCCTTGCATCTCAACTATCCACAAGCTCTTTCTTCAAATCCTGAGCTTAGAGTCCTCATGGCCATGAAAGCTTCACTGGATCCTGAGAACAGATTCCTTTCTTCTTGGACCAGTGACAATGACCCTTGCAGTGACTCTTTTGAAGGTGTGGCTTGCAATGAGTATGGCCACGTTGTTAATATTTCTCTGCAGGGGAAGGGGCTGATGGGTCAGATACCAAAGGAGATTGCTGAGCTCAAGAGCTTGTCTGGGCTTTTCTTGCATTTCAACTCTCTGTATGGGGAGATACCGAAGGAAATCTCAGCCTTGGCTGAGCTTTCTGATTTGTACCTGAATGTGAATAATCTCTCTGGGGTGATACACCCTGGGATTGGGAATATGTCTAATCTTCAAGTTTTACAGCTCTGTTACAACAAGTTAACTGGGGGCATACCTACACAGTTGGGGTCTCTGAAGAAGCTTAGTGTCCTAGCTCTGCAATCTAATGAATTGACTGGTGCTATTCCTGCGAGTTTGGGTGATCTGGAGATGTTAACTAGGTTGGATCTGAGCTTTAATAACCTTTTTGGTCCTATTCCTGTAAAATTAGCAAATGCCCCTATGCTAGAGATTCTTGATATCAGAAACAACACCCTTTCAGGAAATGTTCCTCAAGCTCTGAAGAGACTGAATGATGGATTCCAATACAGAAACAATCCAAGCTTATGTGGAGATGGATTTTTAGCATTGGATGTTTGTAGTGCATCTGATCAATTAAATCCAAACAGACCTGAACCATTTGGGCCTAATGGTACTGATAAAAATGGCCTCCCAGAGTCTGCAAATTTGCAGCCTGATTGCAGTAAAACTCACTGTTCAACTCCATCAAAAACCTCACAAATTGCTATCGTTTGTGGAGTAATAGGAGTGATAGTTGCCTTGACAGTTTCTGGGCTTTTCGCATTCTCATGGTACCGTCGCAGAAAACAAAAGATTGGAAGTGCTTTTGATGCTTCTGATAGTCGGCTTAGTACTGACCAGGTTAAGGAGGTTTACAGGAAGAGCGCCTCTCCCCTTATCAGTCTGGAATATTCCCATGGGTGGGACCCCTTAGGTCAAAGTGGAAACGGGTTCTCTCAGGAAGTTCCTGGGAGTGTTATGTTCAACTTAGAAGATGTGGAGTCTGCAACACAGTACTTCTCGGACTTGAATTTGTTGGGGAAGAGTAATTTCTCTGCAATCTACAAGGGAATTCTGAGAGATGGGTCAGTTGTTGCAATTAAATGCATTGCCAAGATAAGCTGCAAGTCTGATGAAGCTGAGTTCTTGAAGGGACTAAAGACATTGGCCTCATTGAAGCATGAAAATCTTGTTAGGTTGAGAGGTTTTTGCTGCTCCAAGGGCAGGGGAGAGTGTTTTCTCATCTATGATTTTGTTCCCAATGGAAACCTGTTGCAGTATCTTGATGTGACCGATAACAGTGGGAAGGTTCTTGAATGGTCCACCAGAATTTCTATCATCAATGGCATTGCCAAAGGTATCGGGTATTTACATGGGAAGAAAGGAAACAAATGTGCTCTAGTTCACCAAAATATATCAGCTGAGAAAGTGCTCATTGACCAACATTACAATCCCTTGCTCTCTGATTCCGGCCTGCACAAACTCCTTGCAGATGACATTGTATTCTCTACTCTGAAAGCCACTGCAGCCATGGGATACCTTGCTCCTGAGTACACAACCACAGGCCGGTTCACTGAAAAGAGTGATGTGTATGCATTTGGAATGATTGTATTTCAAATCCTTTCTGGGAAACGAAAAATCGCCCACTTGACCCGCAATGGTGCTGAATCAGGCAGATTTGAAGATTTTATTGACGCCAATCTTGCTGGTAAATTCTCCGAGTCTGAGGCAGCTAAGCTGGGGAAAATTGCCTTACTTTGCACTCATGACTCTCCTAGCCACAGGCCAGCTATTGAAAATGTGATGCAAGAACTGAATGATTTAGTTAGCCCTTCTTGA 2034 0.4351 MGLSLYLLSFILALHLNYPQALSSNPELRVLMAMKASLDPENRFLSSWTSDNDPCSDSFEGVACNEYGHVVNISLQGKGLMGQIPKEIAELKSLSGLFLHFNSLYGEIPKEISALAELSDLYLNVNNLSGVIHPGIGNMSNLQVLQLCYNKLTGGIPTQLGSLKKLSVLALQSNELTGAIPASLGDLEMLTRLDLSFNNLFGPIPVKLANAPMLEILDIRNNTLSGNVPQALKRLNDGFQYRNNPSLCGDGFLALDVCSASDQLNPNRPEPFGPNGTDKNGLPESANLQPDCSKTHCSTPSKTSQIAIVCGVIGVIVALTVSGLFAFSWYRRRKQKIGSAFDASDSRLSTDQVKEVYRKSASPLISLEYSHGWDPLGQSGNGFSQEVPGSVMFNLEDVESATQYFSDLNLLGKSNFSAIYKGILRDGSVVAIKCIAKISCKSDEAEFLKGLKTLASLKHENLVRLRGFCCSKGRGECFLIYDFVPNGNLLQYLDVTDNSGKVLEWSTRISIINGIAKGIGYLHGKKGNKCALVHQNISAEKVLIDQHYNPLLSDSGLHKLLADDIVFSTLKATAAMGYLAPEYTTTGRFTEKSDVYAFGMIVFQILSGKRKIAHLTRNGAESGRFEDFIDANLAGKFSESEAAKLGKIALLCTHDSPSHRPAIENVMQELNDLVSPS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0626 677 Pfam Protein tyrosine and serine/threonine kinase 410 670 IPR001245 GO:0004672|GO:0006468
Vvi15g0626 677 FunFam Leucine-rich repeat receptor-like protein kinase 26 137 - -
Vvi15g0626 677 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vvi15g0626 677 CDD TM_EGFR-like 300 337 - -
Vvi15g0626 677 SUPERFAMILY Protein kinase-like (PK-like) 382 670 IPR011009 -
Vvi15g0626 677 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Vvi15g0626 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 671 - -
Vvi15g0626 677 FunFam Protein NSP-INTERACTING KINASE 2 138 259 - -
Vvi15g0626 677 Pfam Leucine rich repeat 140 200 IPR001611 GO:0005515
Vvi15g0626 677 MobiDBLite consensus disorder prediction 264 288 - -
Vvi15g0626 677 SUPERFAMILY L domain-like 24 234 - -
Vvi15g0626 677 Gene3D Ribonuclease Inhibitor 137 255 IPR032675 -
Vvi15g0626 677 Gene3D Transferase(Phosphotransferase) domain 1 485 676 - -
Vvi15g0626 677 FunFam Protein NSP-INTERACTING KINASE 2 484 674 - -
Vvi15g0626 677 ProSiteProfiles Protein kinase domain profile. 405 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0626 677 FunFam Protein NSP-INTERACTING KINASE 2 376 483 - -
Vvi15g0626 677 CDD STKc_IRAK 411 673 - -
Vvi15g0626 677 Gene3D Phosphorylase Kinase; domain 1 380 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0626 Vvi-Chr15 14806768 14809880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0626 8 518 Miscellaneous Gene Families AT4G22730 56.762 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vvi15g0626 PK_Tyr_Ser-Thr 7.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0626 - - vvi:100247285 1338.17