Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0616 ATGATGGTTTCTTCAAATCTTCTTCCTAGATGGCTTGAGGCTCTTCTCAGGGAGAAGTTCTTCAACGCTTGTGTAATTCACGAGTATGCAAAGAAGAATGAAAAGAACATCTTTTGCTTGGACTGTTGCACCAGTATTTGCCCTCACTGCTTGTCCCCTCACCGCTCTCACCGACTTTTGCAGATTAGAAGGTATGTTTACCACGATGTTATAAGATTGGATGATGCTGAGAAATTGATGGACTGTGCTTCAGTTCAAGCTTACACCACGAATAGTGCAAAAGTGGTGTTTTTAAATCAAAGGCCACAGACAAGGCAATTCAGAGGCTCTGGGAACATCTGCAGCACCTGTGACAGGAGTCTTCAAGACCCATATCACTTCTGCTCCCTCTCCTGCAAGATTGACTATCTCCTGAGAACAGAAGGCAAGCTGTCCAAGTACCTCTTCGAGTGCGAGTACCTCACGTTGCCCGAACCGGGTTGTGAGCTCGAGGACGGTTTACTCACGCCTGACTCGGTACTCGAACCGCCAGGCTCGATGAGGACGTCGTCGAGTTCGAGCGCCGGCGAGGGTGCCGGAGGAGTCGGATGCCGGACTCTGGCTTGCACTGCGACCACCGAGTTCGTGAGGAAGAAGCGGAGTAGCGTATCGGTGTACCGGACAGCCTGCCGGCCGATATACTCCCCGGTTTCGGAGATTTCGGCCGGCATGATGAACCGGCGAAAGGGCACTCCACAGCGGTCGCCGCTGTACTGA 756 0.5212 MMVSSNLLPRWLEALLREKFFNACVIHEYAKKNEKNIFCLDCCTSICPHCLSPHRSHRLLQIRRYVYHDVIRLDDAEKLMDCASVQAYTTNSAKVVFLNQRPQTRQFRGSGNICSTCDRSLQDPYHFCSLSCKIDYLLRTEGKLSKYLFECEYLTLPEPGCELEDGLLTPDSVLEPPGSMRTSSSSSAGEGAGGVGCRTLACTATTEFVRKKRSSVSVYRTACRPIYSPVSEISAGMMNRRKGTPQRSPLY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0616 251 ProSiteProfiles Zinc finger B-box type profile. 24 62 IPR000315 GO:0008270
Vvi15g0616 251 MobiDBLite consensus disorder prediction 174 194 - -
Vvi15g0616 251 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 250 - -
Vvi15g0616 251 MobiDBLite consensus disorder prediction 176 190 - -
Vvi15g0616 251 Pfam PLATZ transcription factor 63 134 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0616 Vvi-Chr15 14718204 14719594 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vvi15g0616 PLATZ 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0616 - - vvi:100248806 514.612