Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0613 ATGTCCTCCTCATCTGCCTTTTCACCGGACCACCTCTCCCCCACCTCCGACCAGCTCTGTTACGTCCATTGCAACTTTTGTGACACTGTCCTCGCGGTGAGCGTTCCTTGCACTAGTTTGTTCAAGACTGTTACGGTTCGATGCGGTCACTGCACCAACCTCTTGTCCGTCAACATGCGTGGACTGCTTCTTCCTGCTGCTAATCAGCTTCACCTGGGACACTCTCTCTTCTCTCCTCATAATATTCTGGAGGAGATCCGCAGCCCACCGTCCAGTATGTTAATCAATCAGCCCAACCCGAATGAGGCGGTCATGCCGGTGCGAGGAGTCGATGAGATACCGAAACCCCCAGTAGTTAACAGACCCCCGGAGAAGAGACAGAGAGTCCCATCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGTATCAAAGCTGGAAATCCAGGCATAAGTCACAGAGAGGCCTTTAGTGCTGCTGCAAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAACCCGTGAAGAAAGCTAACGTGCGCCAACAGGAAGGAGAGGACATGCTCATGAAAGATGGTTTCTTTGCTCCTGCCAATGTGGGTGTCTCCCCCTACTAA 633 0.5182 MSSSSAFSPDHLSPTSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSLFSPHNILEEIRSPPSSMLINQPNPNEAVMPVRGVDEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPGISHREAFSAAAKNWAHFPHIHFGLMPDQPVKKANVRQQEGEDMLMKDGFFAPANVGVSPY* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0613 210 Gene3D High mobility group box domain 115 171 IPR036910 -
Vvi15g0613 210 CDD HMG-box_SF 128 164 - -
Vvi15g0613 210 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
Vvi15g0613 210 FunFam Axial regulator YABBY 119 190 - -
Vvi15g0613 210 Pfam YABBY protein 15 174 IPR006780 GO:0007275
Vvi15g0613 210 SUPERFAMILY HMG-box 117 167 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0613 Vvi-Chr15 14675136 14677631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0613 26 208 C2C2-YABBY Transcription Factor Family AT4G00180 61.722 2.11e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vvi15g0613 YABBY 3.7e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0613 K25796 - vvi:100243667 438.343