Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0609 ATGGGTTTGTGGACATCCTCGACACTGCCTCTCTATATAAAGCACCCCATTTGTGACTATCAACTCCACACACACCTCTTCGAAAACCCTAACCAGATAAACCCTAATCAAGCCATGGTTGTAGAGTTTCTACTTGTGTCTCTCCTCCTTTCTCCGATTGTAGTCTCCGGCTACAAGTCGGAAGACGTGAAATCATGGTGTAGCCAAACACCCTACCCTCAACCTTGTGAGTATTTTCTGAGCCATAAACCTGACCATTCTCCTATCAAACAGAAGTCCGATTTTCTCAAAATATCGATGCAGCTGGCATTGGAACGTGCCCTTAGAGCCGAAAGTAACACCTATTCGCTAGGCTCAAAGTGCCGAAACGAGCTCGAAAAGACTGCATGGAGTGACTGTCTTAAGCTCTATGAGTACACCATTCTTAGGCTTAACAAAACTGTTGATCCCAACACAAAGTGCAGCCAAGTTGACTCTCAAACATGGCTCAGCACTGCCCTAACAAACCTCGAAACCTGTCGAGCCGGGTTCGTCGAGCTCGGTGTCTCGGACTATCTCTTGCCCTTGATGTCCAACAACGTTTCCAAGCTCATCAGCAACACTCTATCACTCAACAAGGTCCCATACACTGAGCCTAGCTACAAAGAGGGGTTCCCAACTTGGGTCAAGCCTGGTGACCGGAAGCTTCTGCAGTCATCTTCTCCGGCTTCACAGGCAAATATCGTGGTGGCAAAGGATGGTTCCGGTGATTACACAACAATAACAGCAGCAGTATCGGCCGCGTCGAAGCGATCGGGGACTGGAAGGTACGTGATATATGTGAAGGCAGGGACATACAATGAGAATATTGAGATTGGAGCTAAATTGAAGAATATCATGCTGTTGGGTGACGGTATCGGAAAGACCATCATCACCGGAAGCAAGAGCGTCGGAGGAGGCTCCACCACCTTCAATTCAGCCACCGTTGCTGCGGTTGGAGATGGATTCATCGGTCGAGGGCTGACGATCCGCAACACTGCCGGAGCAGCAAACCACCAGGCAGTGGCTCTCCGGTCGGGGTCCGATCTCTCGGTGTTCTACCAGTGCAGCTTTGAAGGGTACCAAGACACTCTCTACGTCCACTCCGAGAGACAATTCTACAGAGAATGTGACATCTACGGAACAGTAGATTTCATTTTTGGCAATGCTGCAGTCGTGCTACAAAACTGTAACATTTATCCCCGCAACCCTCCCAACAAGACTAACACAATCACTGCCCAAGGAAGGACCGATCCCAACCAAAATACCGGAATTTCCATCCACAATTGTAAGGTTACTGCTGCCTCAGACCTTAAATCGGTCCAAAGCTCGGTGAAGACATACCTTGGACGTCCATGGAAGGAGTACTCACGGACCGTCTTCATGAAGACGTACCTCGATAGCCTAATCAACCCTGCAGGGTGGATGGAATGGAGTGGTAACTTTGCCCTAAAGACACTATACTATGGTGAATACATGAACACCGGTCCTGGTTCATCGACATCGAATAGGGTAAATTGGGCTGGTTACCATGTTATAACGAGTTCATCGGAAGCGTCAAAGTTCACCGTCGGAAACTTCATCGCCGGCAACTCTTGGTTGCCGGCAACCAACGTGCCTTTCACCTCCGGCCTTTGA 1656 0.4915 MGLWTSSTLPLYIKHPICDYQLHTHLFENPNQINPNQAMVVEFLLVSLLLSPIVVSGYKSEDVKSWCSQTPYPQPCEYFLSHKPDHSPIKQKSDFLKISMQLALERALRAESNTYSLGSKCRNELEKTAWSDCLKLYEYTILRLNKTVDPNTKCSQVDSQTWLSTALTNLETCRAGFVELGVSDYLLPLMSNNVSKLISNTLSLNKVPYTEPSYKEGFPTWVKPGDRKLLQSSSPASQANIVVAKDGSGDYTTITAAVSAASKRSGTGRYVIYVKAGTYNENIEIGAKLKNIMLLGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIGRGLTIRNTAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRNPPNKTNTITAQGRTDPNQNTGISIHNCKVTAASDLKSVQSSVKTYLGRPWKEYSRTVFMKTYLDSLINPAGWMEWSGNFALKTLYYGEYMNTGPGSSTSNRVNWAGYHVITSSSEASKFTVGNFIAGNSWLPATNVPFTSGL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0609 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 207 IPR035513 -
Vvi15g0609 551 CDD PMEI-like_3 65 206 - -
Vvi15g0609 551 Pfam Pectinesterase 240 537 IPR000070 GO:0030599|GO:0042545
Vvi15g0609 551 Gene3D - 235 551 IPR012334 -
Vvi15g0609 551 FunFam Pectinesterase 234 551 - -
Vvi15g0609 551 Pfam Plant invertase/pectin methylesterase inhibitor 63 204 IPR006501 GO:0004857
Vvi15g0609 551 NCBIfam pectinesterase inhibitor domain 42 207 IPR006501 GO:0004857
Vvi15g0609 551 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Vvi15g0609 551 PANTHER PECTINESTERASE 49 543 - -
Vvi15g0609 551 SUPERFAMILY Pectin lyase-like 234 550 IPR011050 -
Vvi15g0609 551 SMART PMEI_2 58 204 IPR006501 GO:0004857
Vvi15g0609 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 207 IPR035513 -
Vvi15g0609 551 FunFam Pectinesterase 58 207 - -
Vvi15g0609 551 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0609 Vvi-Chr15 14632241 14634870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0609 37 551 Carbohydrate Esterase AT2G45220 69.380 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0609 K01051 - vvi:100255703 1100.89