Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0608 ATGGCTTATTGGGTCACTACCTTTCTTCTTCTCTTATCCTTCACCATCAGTGTTGCCTGCAATGAAGAGCTCAAAGCGGTTCGGACGGCTCGGTTCGGACTCTTGCAAGGTGGGAGATGGGCTCGGGGTTCATTGAGGCTTCACGGGTTAAATCTTGTTGATTCGGGTTATGTGGGTGAGGCTCTGGGTGACTGTGTTAAGCTTTATGAAGAGTCCGAGAGCCGACTGACCAGGTTGCTCTCGGGTGAGACCCGAAACTGTGATGATGCACGTACGTGGCTCAGCAGCGCGCTGGCTAGCCATAGGACCTGTTTGGATGGCTTGGAGGGTAAGGGGATGGCTGAGGCTCCTATGGCTCGGAATGTCACCGTGTGGCTAAGTGAAGCTTTGGCTTTGTATGCGAAGTATAAGGAGCCGGATACGGATGCGGAGAAGGAAGTGCAACCGACATTGAAACCGAGCCAAAATGAAGTGATGCTAGCTGAATGGAGTCCAAAAACATCCAAGGCAGACATCGTGGTGGCCAAGGACGGATCCGGAAATCACATGACAATTAATGAAGCTGTTGCTGCACTAACCCGCATGGTCCATAAGAGGACTCGAAGAGTGGTTGTCTACGTGAAGTCCGGGATCTACAATGAGAAGGTGGAGATTGGAAAAAACTTGAACAATGTGATGTTTGTTGGTGATGGTGTTGATAAAACCATTATCACCGCTGATCGAAATGTCCACGATGGTGCAACCACTCCAAGCTCCGCCACGTTTGGTGTGTCTGGAGATGGCTTTTGGGCAAAAGACATAACATTTGAGAACAGAGCAGGGCCTCACAAACATCAGGCAGTGGCAATGAGGGTGAGCTCGGACCTCTCGGTGTTCTACCGTTGTAGTTTTAAAGGTTACCAAGACACATTATACGTCCATTCTAATAGACAATTCTTTCGCGACTGCCATGTATATGGCACTATCGATTTCATATTCGGTAATGCCGCAGTTGTCTTCCAAAACTGTGATATCTACGTGAGAAAACCAATGAACCGCCAATCCAACATGATCACCGCACAGGGAAGAGACATCCCCGAAGAGCCTACTGGAATTTCAGTACAAGCTTCGAGAGTTCTTTCATCTCCTGAATTCACTACTGTTAAAGGCTCTTTCAAGAGTTTCTTGGGTCGACCTTGGAAGCGATATTCTAGAACTGTTTTCCTAGAGACAGACTTGGATGGTTTGATTGATCCAAGAGGATGGACAGAGTGGAGTGGAAACTATGGGCTGTCGACATTATACTATGGGGAGTATAATAATTCAGGTGGTGGAGCATCGACAAAGGAAAGAGTGAAGTGGCCTGGTTTTCATGTGCTAAATGGTACTGAAGATGCTATGCCTTTCACAGTAAGTAGATTCATACAAGGAGAGAAATGGATTCCTGCTAGTGGTGTTCCCTTCTCTCCTGGAATTTAA 1458 0.4739 MAYWVTTFLLLLSFTISVACNEELKAVRTARFGLLQGGRWARGSLRLHGLNLVDSGYVGEALGDCVKLYEESESRLTRLLSGETRNCDDARTWLSSALASHRTCLDGLEGKGMAEAPMARNVTVWLSEALALYAKYKEPDTDAEKEVQPTLKPSQNEVMLAEWSPKTSKADIVVAKDGSGNHMTINEAVAALTRMVHKRTRRVVVYVKSGIYNEKVEIGKNLNNVMFVGDGVDKTIITADRNVHDGATTPSSATFGVSGDGFWAKDITFENRAGPHKHQAVAMRVSSDLSVFYRCSFKGYQDTLYVHSNRQFFRDCHVYGTIDFIFGNAAVVFQNCDIYVRKPMNRQSNMITAQGRDIPEEPTGISVQASRVLSSPEFTTVKGSFKSFLGRPWKRYSRTVFLETDLDGLIDPRGWTEWSGNYGLSTLYYGEYNNSGGGASTKERVKWPGFHVLNGTEDAMPFTVSRFIQGEKWIPASGVPFSPGI* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0608 485 ProSitePatterns Pectinesterase signature 2. 318 327 IPR033131 -
Vvi15g0608 485 Gene3D - 165 485 IPR012334 -
Vvi15g0608 485 Pfam Plant invertase/pectin methylesterase inhibitor 56 131 IPR006501 GO:0004857
Vvi15g0608 485 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 131 IPR035513 -
Vvi15g0608 485 FunFam Pectinesterase 165 485 - -
Vvi15g0608 485 NCBIfam pectinesterase inhibitor domain 60 121 IPR006501 GO:0004857
Vvi15g0608 485 CDD PMEI-like_4 5 135 - -
Vvi15g0608 485 SUPERFAMILY Pectin lyase-like 167 484 IPR011050 -
Vvi15g0608 485 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 135 IPR035513 -
Vvi15g0608 485 PANTHER PECTINESTERASE 60 475 - -
Vvi15g0608 485 Pfam Pectinesterase 171 471 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0608 Vvi-Chr15 14614883 14617208 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0608 8 485 Carbohydrate Esterase AT3G60730 55.929 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0608 K01051 - vvi:100252362 987.252