Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0605 ATGATGGTTGGCGGCAAGTTGAAATTGGAGTTGATCGCTAATGAAAAAATCCGGCACAGAACTTTCCAAAATAGACAAAAGGGTCTGAGGAAAAAAGTTCATGAGCTCTCAACTCTATGTGGTGTTGAAGCATGTATGATCATATGTTGTCCTAATGGCAACGGCACCTATTCTTCTCAGCCCTGTGTTTGGCCTGAAAATCACTACGAAGTTGAACGGATAATTAACAAGTACATCAATGAGAGGAAGAAAGAGAATGGAAAGAGGACGGTGGATTTATCTGGGGTTCTTGAAAGCAGAAAGACGAGGGCCGAATTTGAGCTCCAGAAGTTGCAGGAAAAAAATGGCAAAACCAAAGGGCAGACTTCCGAGACTGGATTGGAATTGGATGGGCTTTCCTATGAAAAGCTGATGGAAATTGTTAATAAGTTGGACAAGAAACTTGAGAGTGTGGAGAGTCTGATTGATTTGAAGAGGGGAGAAGCGGGTTTGATGAGTGAGACTCTTGCGAACTGCCCTGATCATATGCCGGGTTTGCCTACAGCTGAGCCAATTGATATCCATGTGGCCATGGATGACTCAGCCTTTCAAGGCTCTGAAATGGTCTTGTATGATTTGGATTTTCCTGAACTAAGTGATGGAGGGGTTGAATCTGATTTGACCTGGACGATGATGAATTTGGAGAATAACGAATGTCCAGAACTTGGAGGTGGAAAGAAATCCAGCAGTGAGCTCCTGCACCAAAGTGATCCAGCTCATGGGATGTTGGAGGATAACACTCATCCTTCAACTTCATATCAAAAGATGGGGACTGTTCCTACCATGCAAGGCACTGAAACGATCTTCTATGATTTGGATTTTGCTGATCTAAGTAATGGAGGGGTTGAGATAATGATGAACATGGAGAACAACGAATACCCACAACTTGGAGGTGGAAGGGCATCCAGCAGCGACCTCCTGTTCCAGAGTGATCCAGCTCATGGGATGTTCCAGAATAACATCGATCCTTCAACTTCATATCAGAATATGGGGACTGCTCCTACCATGCAAGGTACGTCGGTATCTTCAACTTCATATCAGAGTATGGGCACTGTTCCTACCATGCAAGGGATGTCAGTATCCGAGAATACGATGATGTTTAACACCACTCCCACAAATTCCCTGCCGCAGATGGGGTTATCTCAGAATACGATGCCCGACATTGATCAAAGCATTTCTATGCAGCAAATAGCAGCGTATATGCAGTACCTCTTGGCATAA 1260 0.4429 MMVGGKLKLELIANEKIRHRTFQNRQKGLRKKVHELSTLCGVEACMIICCPNGNGTYSSQPCVWPENHYEVERIINKYINERKKENGKRTVDLSGVLESRKTRAEFELQKLQEKNGKTKGQTSETGLELDGLSYEKLMEIVNKLDKKLESVESLIDLKRGEAGLMSETLANCPDHMPGLPTAEPIDIHVAMDDSAFQGSEMVLYDLDFPELSDGGVESDLTWTMMNLENNECPELGGGKKSSSELLHQSDPAHGMLEDNTHPSTSYQKMGTVPTMQGTETIFYDLDFADLSNGGVEIMMNMENNEYPQLGGGRASSSDLLFQSDPAHGMFQNNIDPSTSYQNMGTAPTMQGTSVSSTSYQSMGTVPTMQGMSVSENTMMFNTTPTNSLPQMGLSQNTMPDIDQSISMQQIAAYMQYLLA* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0605 419 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Vvi15g0605 419 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Vvi15g0605 419 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Vvi15g0605 419 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Vvi15g0605 419 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Vvi15g0605 419 ProSiteProfiles MADS-box domain profile. 2 53 IPR002100 GO:0003677|GO:0046983
Vvi15g0605 419 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Vvi15g0605 419 Coils Coil 134 154 - -
Vvi15g0605 419 CDD MADS_SRF_like 6 92 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi15g0605 419 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 165 - -
Vvi15g0605 419 SUPERFAMILY SRF-like 5 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0605 Vvi-Chr15 14586127 14587386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0605 2 97 Type I MADS-box Gene Family AT3G05860 42.708 2.40e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0605 SRF-TF 6.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0605 - - vvi:109124052 848.58