Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0604 ATGAGTAGTTTTAAGCAGTCCCCTGGCAGACACCGTAGTGCTGGCATGATGCGTTCTGGGCCTTCTGGCCGCAGTCTTAGGACTGTAAAGAGCCTACTGGAATTTCAGTACAAGAGTTTCTTGGGTCGACCTTGGAAGCGATGTTCTAGAACTGTTTTCCTAGAGACAGACTTGGATGGTTTGATTGATCCAAGAGGATGGACAGAGTGGAGTGGAAACTATGGGCTGTCGACATTATACTATGGGGAGTATAATAATTCAGGTGATGGAGCATCGACAAAGGAAAGAGTGAAGTGGCCTGGTTTTCATGTGCTAAATGGTGCTGAAGATGCTATGCCTTTCACAGTGAGTAGATTCATACAAGGAGAGAGAAATGGATTCCTGCTAGTGGTGTTCCCTTCTCTCCTGGAATTTAAGAGAGGTCTGACTATAATTAAGTCTGTAATTAACTAG 453 0.4459 MSSFKQSPGRHRSAGMMRSGPSGRSLRTVKSLLEFQYKSFLGRPWKRCSRTVFLETDLDGLIDPRGWTEWSGNYGLSTLYYGEYNNSGDGASTKERVKWPGFHVLNGAEDAMPFTVSRFIQGERNGFLLVVFPSLLEFKRGLTIIKSVIN* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0604 150 SUPERFAMILY Pectin lyase-like 36 123 IPR011050 -
Vvi15g0604 150 Gene3D - 25 129 IPR012334 -
Vvi15g0604 150 PANTHER PECTINESTERASE 34 125 - -
Vvi15g0604 150 Pfam Pectinesterase 34 123 IPR000070 GO:0030599|GO:0042545
Vvi15g0604 150 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0604 Vvi-Chr15 14584273 14584778 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0604 36 123 Carbohydrate Esterase AT3G60730 72.727 6.00e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0604 K01051 - vvi:100252362 182.57