Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0602 ATGCTACCCACTGGAGTGAAAGAAACTCAACTCCGTGAGAGCAACAGCCAGAAGGTTCACCCCCAACCCATGGAAGAGGCCACTAATCAGACTCCAGAAGCAATGGAAGCCCTGATATCCAAGATTTTTATGAACATCTCCTCCCTAAAGTCAGCTTATATTCAGCTCCAAGCTGCTCATACTCCTTATGAACCTGATAAAATCCAAGCTGCTGATAAACTTGTGATTTCAGAACTGAAGAACCTTTCTGAACTCAAGCATTTTTACAGGGAGAAAAACCCCAAACCTATATGTGTTTCCCCTCAAGACTCTCGCTTAGCTGCAGAGATCCAAGAACAACAGAACCTGTTGAAAACCTATGAGGTCATGGTGAAGAAATTCCAATCTGAAATTCAGAATAAAGATTCTGAAATTCTTCAGTTGCAGCAGCAGATCCAGGAAGCTAACCAGAAGCGAGTGAAATTGGAGAAGAATCTGAAGCTGAGGGGATTGTCAACCAAAGAATCAGAAGGCTCTGTGGAAGAAAATGGATTCTTCCCAGTGGATTTAACCCCTGATCTGTTCATTTCGGTTGTAGAAGCTGCTTTTAAAGCAATTCATGATTTTTCTAAGCCATTGATCAACATGATGAAAGCAGCTGGATGGGACCTTGATGCTGCTGCAAATTCCATTGAACCTAATGTTGTTTATGCAAAGAGAGCTCACAAGAAATATGCATTTGAATCCCATATATGCCAGAGAATGTTCAGTGGTTTTCAGCATGAAAGCTTCTCCATCAAATCAGACAATCTTACTGTCACTAAAGAGAGTTTCTTCCACCAATTTCTTGCCTTGAGGGAAATGGATCCACTAGACACTCTGGGCCAAAACCCAGATTCCATTTTTGGGAAATTTTGCAGAAGCAAGTACCTTGTAGTCGTTCACCCGAAGATGGACGCTTCATTCTTTGGGAACTTAGATCAGCGGAACTATGTAATGGGAGGTGGGCATCCAAGGACACCCTTCTACCAGGCTTTTCTGAAACTAGCCAAGTCTATCTGGCTTTTGCACCGGTTGGCTTATAGTTTCGATCCTAATGTTAAGGTCTTTCAGGTGAAGAGGGGGAGTGAATTCTCAGAGGTCTATATGGAAAGCGTAGTGAAAAATTTGGTTATGGATGAAAGTGATGAAAAGCCTAAGGTGGGGCTAATGGTTATGCCTGGCTTTTGGATTGGTGGCAGTGTGATTCAGTGTCGAGTCTACCTCTCTGGCATGAGGGTTGCGGAGCATTTTGTTATGGCAAAACTTACTCTTTCCTTTCTACTTCTCCTTCTGTTCGTTTTCTCTGTTCTTGGATCGGTTGAGCCGGCTTCTGTTCAGCATGCTCGGAAATCCCGAGCAAGGACCTTTATTGAGGCCTCATGCCGGTCCACCCGGTATCCGTCCCTCTGTGTTAAGTGCCTGTCCGGCTACGCCAACAAGACCCAACAGAGTCCATTCCAATTAGCCCAGGTTGCATTATCTGTAAGCCTAGCCAAGACCAGGCACACAAGAGCATACGTAATGGAGGTGGCTAGCAACTTTAAGGACGTCGAGGGTAGGACTCACCAAGACATTAGCGACTGTTTAGATCAAATAAACGACGGTGTTGATCGTCTTGCCCAGTCCATTATAGAGCTCCGACGCATGAACCAAGAAGGGGGTGACAGTGACTTCACGTGGCGCATGAGCAACATCGAGACTTGGGTGAGCGCAGCGCTAACCGATGCTACCACATGTGTTGATGGGTTTTCAGGGCGTGACATGGGGAAGCTGAAGGCCACAATTAAGGGAAAGGTGCTGAATGTGGCACAAGTCACCAGCAACGCGTTGGCCTTGGTTAACCGCTTTGCTGCTAGGCACCGTGCCACTAACAAGCCATGA 1902 0.4579 MLPTGVKETQLRESNSQKVHPQPMEEATNQTPEAMEALISKIFMNISSLKSAYIQLQAAHTPYEPDKIQAADKLVISELKNLSELKHFYREKNPKPICVSPQDSRLAAEIQEQQNLLKTYEVMVKKFQSEIQNKDSEILQLQQQIQEANQKRVKLEKNLKLRGLSTKESEGSVEENGFFPVDLTPDLFISVVEAAFKAIHDFSKPLINMMKAAGWDLDAAANSIEPNVVYAKRAHKKYAFESHICQRMFSGFQHESFSIKSDNLTVTKESFFHQFLALREMDPLDTLGQNPDSIFGKFCRSKYLVVVHPKMDASFFGNLDQRNYVMGGGHPRTPFYQAFLKLAKSIWLLHRLAYSFDPNVKVFQVKRGSEFSEVYMESVVKNLVMDESDEKPKVGLMVMPGFWIGGSVIQCRVYLSGMRVAEHFVMAKLTLSFLLLLLFVFSVLGSVEPASVQHARKSRARTFIEASCRSTRYPSLCVKCLSGYANKTQQSPFQLAQVALSVSLAKTRHTRAYVMEVASNFKDVEGRTHQDISDCLDQINDGVDRLAQSIIELRRMNQEGGDSDFTWRMSNIETWVSAALTDATTCVDGFSGRDMGKLKATIKGKVLNVAQVTSNALALVNRFAARHRATNKP* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0602 633 NCBIfam pectinesterase inhibitor domain 431 621 IPR006501 GO:0004857
Vvi15g0602 633 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 463 623 IPR035513 -
Vvi15g0602 633 SMART PMEI_2 459 619 IPR006501 GO:0004857
Vvi15g0602 633 CDD PMEI-like_3 466 625 - -
Vvi15g0602 633 FunFam Pectinesterase inhibitor 3 459 624 - -
Vvi15g0602 633 Pfam Plant invertase/pectin methylesterase inhibitor 463 619 IPR006501 GO:0004857
Vvi15g0602 633 Coils Coil 110 158 - -
Vvi15g0602 633 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 12 416 IPR040225 GO:0009639|GO:0009959
Vvi15g0602 633 MobiDBLite consensus disorder prediction 1 29 - -
Vvi15g0602 633 Pfam Plant protein of unknown function (DUF641) 32 157 IPR006943 -
Vvi15g0602 633 Gene3D Invertase/pectin methylesterase inhibitor family protein 460 624 IPR035513 -
Vvi15g0602 633 MobiDBLite consensus disorder prediction 8 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0602 Vvi-Chr15 14555783 14559734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0602 464 627 Carbohydrate Esterase AT3G49220 28.485 2.11e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0602 - - vvi:100250526 828.55