Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0577 ATGATTATAGGTGATCGGTTGGTAATCCCAAAGAAGATAGGTCGTAGACTAGGAATGGGAACAAACATGTACCCCTCTTCATCATTATTGGGACGTGAGAAAGATGAAAGCGAAGTTCTCCCAATGGATGAGCTTATTGAAAAAGCTGATGGATTTGTTGGTGTATTCCCTAAACATAAGTATGAAATTGTGAGAATTCTACAAGAAAAAACGCATGTGTGCGGAATGACTAAAGATGGCATGAATAATGCGCATGTGCTGAAGAAAGCAGATATTGGAATAGTTGTGGTGGATGCTACAAACGCTACAAGGAGTGCTTTGATATTGCCTTAA 333 0.3934 MIIGDRLVIPKKIGRRLGMGTNMYPSSSLLGREKDESEVLPMDELIEKADGFVGVFPKHKYEIVRILQEKTHVCGMTKDGMNNAHVLKKADIGIVVVDATNATRSALILP* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0577 110 SUPERFAMILY HAD-like 1 104 IPR036412 -
Vvi15g0577 110 FunFam ATPase 4 plasma membrane-type 1 109 - -
Vvi15g0577 110 PRINTS H+-transporting ATPase (proton pump) signature 49 65 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0577 110 PRINTS H+-transporting ATPase (proton pump) signature 77 93 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0577 110 PANTHER CALCIUM-TRANSPORTING ATPASE 1 106 - -
Vvi15g0577 110 Gene3D - 1 106 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0577 Vvi-Chr15 14278716 14279048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0577 1 106 Primary Pumps ATPases AT3G47950 72.897 9.22e-48 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0577 K01535 - vvi:100265284 175.637