Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0574 ATGACGCTTAACCTTGAGGTTTGTGTTAAGACTATTACAGGTGATCGGTTGGTAATCCCAAAGGAGATAGGTCGTAGACTAGGAATGGGAACAAACATGTACCCTTCTTCATCATTGTTGGGACGTGAGAAAGATGAAAGTGAAGTTCTCCCAGTGGATGAGCTTATTGAAAAGGCTGATGGATTTGTTGGTGTATTCCCTAAACATAAGTATGAAACTGTGAGAATTCTACAAGAAAAAACACATGTGTGCGGAATGACTAAAGATGGCATGAATAATGCGCCTGCGCTGAAGAAAGCAGATATTGGAATAGCTGTGGTGGATGCTACAAACGCTACAAGGAGTGCTATTGATGTTGTCTTAACAGAACCTAGTTTAAGTGTGATTATCAGCGTTGTCTTAACTAAATTATACAATATATGCGTCTCTATAACCATAAGGATTGTGCTTGGTTTCGTGCTCCTAGCATTGATATGGGAATATGACTTCCCACCATTCAGGGTTCTGATTATTGCTATACTAAATGATGGGACCATCATGACCATTTCCAAATATTGGGTCAAGCCATCTCCAAAACCAGACAGTTGGAAGCTCAATGAAATATTTGCAACTGGCGTTGTCATTGGCACATATCTTGTTTCAGTTACTATCTTATTTTATTGGGCTATAGATGACCTACTTCCATGTGATACCCTAAAGAGTACTGAGGAGATCTCATCTGCTATATATCTGCAAATATTAGTTTTGCTTCAATTAGTGGCATTGGCTGGGGAAGAGCTATGGGGGAGTGGCAGTGGCTATGATGATGCTAATGGGAATTCAGGGTATGGAAATGCATCATGGAAATATGATCCATCACATGCTTCTAGAAATTATGGAGTTCAGACAAATGGTCCTCATGGTGGACAAGTTGGCTATGGTGGTGATGCACTTAGATGGTTGGTCCATGCAAAAAAGTCTGTGTGA 966 0.4037 MTLNLEVCVKTITGDRLVIPKEIGRRLGMGTNMYPSSSLLGREKDESEVLPVDELIEKADGFVGVFPKHKYETVRILQEKTHVCGMTKDGMNNAPALKKADIGIAVVDATNATRSAIDVVLTEPSLSVIISVVLTKLYNICVSITIRIVLGFVLLALIWEYDFPPFRVLIIAILNDGTIMTISKYWVKPSPKPDSWKLNEIFATGVVIGTYLVSVTILFYWAIDDLLPCDTLKSTEEISSAIYLQILVLLQLVALAGEELWGSGSGYDDANGNSGYGNASWKYDPSHASRNYGVQTNGPHGGQVGYGGDALRWLVHAKKSV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0574 321 Gene3D - 125 254 - -
Vvi15g0574 321 SUPERFAMILY Calcium ATPase, transmembrane domain M 138 254 IPR023298 -
Vvi15g0574 321 PRINTS H+-transporting ATPase (proton pump) signature 118 143 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0574 321 PRINTS H+-transporting ATPase (proton pump) signature 59 75 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0574 321 PRINTS H+-transporting ATPase (proton pump) signature 87 103 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi15g0574 321 FunFam ATPase 4 plasma membrane-type 4 124 - -
Vvi15g0574 321 PRINTS P-type cation-transporting ATPase superfamily signature 87 106 - -
Vvi15g0574 321 PRINTS P-type cation-transporting ATPase superfamily signature 110 122 - -
Vvi15g0574 321 PRINTS P-type cation-transporting ATPase superfamily signature 5 15 - -
Vvi15g0574 321 Gene3D - 4 124 IPR023214 -
Vvi15g0574 321 PANTHER CALCIUM-TRANSPORTING ATPASE 3 253 - -
Vvi15g0574 321 SUPERFAMILY HAD-like 5 133 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0574 Vvi-Chr15 14233820 14234952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0574 3 251 Primary Pumps ATPases AT1G17260 67.170 2.12e-111 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0574 K01535 - vvi:100265284 380.563