Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0548 ATGCCAGCGTTTGGCATGCCATTACATGGTCCTTTTTACCCTTTGAATGTGGTGCAGATTGGTCAATCTTCATATAGAGGTGGAGGTAGAAGGGGTGGTAGACCCTTTAGAGGGGGTGGTAGATCCTTCAGAGGTGGTGGCAGGGGGCAATTTGGTCCCCATGGCTTTGGACCTGATGGTAGTGGACGTGGCCAGGGAGGTGGCAGGTACTTCCCACCACATAATGCAGCATCAACTCCAAATTTGGGATCTGTTCCAACAGCTGAGGGACCAGGAGCGTTAATCCCAGGAGAGGCTTCACAGCTCCAAGGAAAGACACCTCAAGCTTTCATGCAGCCTTTATCAGGATCAGATCCTGGCCAGGCACAATTTCCTGCAATGGCACAGCATGGCAATCCATTCTGGCGATCCCCATGTATGGCATGGTGTGAACTTTGTAGGGTTGACTGCAATACTTTGGAAATCCTGGAGCAGCACAAGAATGGAAAGAGGCACAAAAAGAATTTGCTAGTATATCAAGAGTTACAGAATCTGAACAAGCTCATAACTGGAGTGCAGAATGAACAAATGCCCATCTCTGATTTCAAACCACAACTTATTCAGTCTGAGAGAGTTGGAGGATCTGAGGATAAACAGCCTTCACAGGGTACAGGAGCTAATGGAACTGAGAAAGAGCAGCAAACAGAAGCTGAGAAGTCTGAAGTTTCAGCACAACCAACAGAAGAACAGGAGAGGAAAGCGAGGATGGATCACTTTCAAGCCCCAGGGCGTGGATTGAAGCGTAAGATGAGAGGGGGCCGAGGTGGGAAGCGCATGCGACAATTTGAGCCCCCTAAACCCAAAGAAATGATTCCTCTGATATGTGAGTTGTGCAATGTCAAGTGCGAGTCTCAGGTTGTTTTTGACAGTCATTTGGCTGGTAAAAAGCACCATTCAAACCTTAAGCGGTTCCATGGCTACCAAGCTATAATTGCAGGAGCACTTCAAGCATTAATCCCATCCAACCCTAATGCTCCATCAAACTTCTTCATCCCTCAAGTTCATCAACAAGGTGTTAGCGGCTCTCAAGGTCTTCCAGCTCAACCAATGCCTTATATGCAACAAGGCCAAGCACCAGGAATGGCACCAGGACCCGCATCAGAACCAGAGCCAGCACCAGTGTCAGCTTTGGAAACACAGGATAAAGAAGGTACCAAGACTGTAGAATCGCAGGCCACATCAGAAGCTGGGGGTCAGAATACTGTTACCGCGGAAGCTAACAGTCAGCTGCAACCTGACATAATAGCATCTGAAGCCTCGTCAGGTGTTAGTACCAATACCACCATTGTGAGTGAAACTTCAGCATTTGAAGGAAAGGATGTTATTCCTCCCATCGATGACCCAGATGTGGCACCCTCAGAGAACAAAGTTAAAGGGGCTGAACAGGTTCTTTCTACAACACCAGCAGACAAAGCTGTTGCAGTTCCCGAATAG 1473 0.4807 MPAFGMPLHGPFYPLNVVQIGQSSYRGGGRRGGRPFRGGGRSFRGGGRGQFGPHGFGPDGSGRGQGGGRYFPPHNAASTPNLGSVPTAEGPGALIPGEASQLQGKTPQAFMQPLSGSDPGQAQFPAMAQHGNPFWRSPCMAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQMPISDFKPQLIQSERVGGSEDKQPSQGTGANGTEKEQQTEAEKSEVSAQPTEEQERKARMDHFQAPGRGLKRKMRGGRGGKRMRQFEPPKPKEMIPLICELCNVKCESQVVFDSHLAGKKHHSNLKRFHGYQAIIAGALQALIPSNPNAPSNFFIPQVHQQGVSGSQGLPAQPMPYMQQGQAPGMAPGPASEPEPAPVSALETQDKEGTKTVESQATSEAGGQNTVTAEANSQLQPDIIASEASSGVSTNTTIVSETSAFEGKDVIPPIDDPDVAPSENKVKGAEQVLSTTPADKAVAVPE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0548 490 Gene3D Classic Zinc Finger 273 316 - -
Vvi15g0548 490 Gene3D Classic Zinc Finger 136 170 - -
Vvi15g0548 490 MobiDBLite consensus disorder prediction 399 447 - -
Vvi15g0548 490 PANTHER OS06G0651300 PROTEIN-RELATED 62 366 - -
Vvi15g0548 490 MobiDBLite consensus disorder prediction 204 277 - -
Vvi15g0548 490 MobiDBLite consensus disorder prediction 24 105 - -
Vvi15g0548 490 SUPERFAMILY beta-beta-alpha zinc fingers 279 317 IPR036236 -
Vvi15g0548 490 SMART ZnF_U1_5 283 317 IPR003604 GO:0003676|GO:0008270
Vvi15g0548 490 SMART ZnF_U1_5 142 172 IPR003604 GO:0003676|GO:0008270
Vvi15g0548 490 Pfam Zinc-finger of C2H2 type 142 165 - -
Vvi15g0548 490 Pfam Zinc-finger of C2H2 type 287 310 - -
Vvi15g0548 490 MobiDBLite consensus disorder prediction 351 490 - -
Vvi15g0548 490 MobiDBLite consensus disorder prediction 225 257 - -
Vvi15g0548 490 MobiDBLite consensus disorder prediction 205 224 - -
Vvi15g0548 490 SUPERFAMILY beta-beta-alpha zinc fingers 140 169 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0548 Vvi-Chr15 13798913 13800385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0548 143 329 C2H2 Transcription Factor Family AT5G61190 27.835 1.33e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0548 - - vvi:104881792 815.839