Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0546 ATGGAGAAGCACAAGTGCAAGCTGTGCTTCAGGAGCTTCTCCAATGGCAGAGCTTTGGGGGGTCACATGAGGTCTCACATGTTGAATCTTCCGATTCCTCCAAAGCAAGAGCAACCCAGTCAAATCGGTGATGATGAGACCGAGTCGGCTTCTTCATCCTCGTCATCTGAAGAAGAAGGTGAGGACAAGGGGCTGGGGTATGAGCTGAGAGAGAATCCTAAGAAGAGTATTCGGTTGGCAGATCCTGAGTTCTCCTTTGCTGTTGATGCTGCCTCTGTTGTTCTTCAGGATAGAGAGAGCGAGACCGAGTCGTCCAAGAACCCAACTCGCCGACGATCCAAGCGGAATCGGAAACTCGGTCTTGCTGACCCGCCTCGCTTCCACGAGCAGAAGAAGATCAAACTCGATAAACTCAGTAAAACCGAGTCCTGGGCTGACCCTGAACCGGTGAGTTCGATCTCCGACGCTACAACCGAAGAAGATGTTGCCTTCTGTTTGATGATGCTTTCTAGAGACAAATGGATAGAGGAGCAGGAAAACCAAGAACGGCGACATGATGAAGAGGATGAAGAAGAAGCAGAAGCAGAAGCAGAAGAAGAAGAGAGGTTTGTTGACGAGACCGATGACTCCGACGAGCTCAAATTGTTCAAGACCAGAGCTCGAGGCAAGTACAAATGCGAGACATGCAACAAAGTGTTTAGATCTTATCAAGCATTGGGTGGTCACCGAGCCAGCCACAAGAAGATCAAAGCCTGTGCTCCAATTAAGGAAGTCGAGTTTGAGCCTGAAAACGCTAGTAATCCCTGTTTGGCTGATGCGAAAATTCACGAATGCCCAGTCTGCTTCCGGAAATTCACCTCCGGACAAGCACTTGGTGGGCACAAGAGATCCCACATCTCAGGCTCAGCAGCTGCTGCAGCAGCTCCGGCACCACCTCCTCCACCAAGAAAAGCTTCAAGCAAGGTGGGCGACAGCATGATAGATCTTAACCTTCCTGCTCCAATTGAAGAAGACGACATTAGCCAAATCGAGCACTCAGCAGTGTCTGATGCAGAGTTCGTGAACCCCATCAGACGATGA 1080 0.5019 MEKHKCKLCFRSFSNGRALGGHMRSHMLNLPIPPKQEQPSQIGDDETESASSSSSSEEEGEDKGLGYELRENPKKSIRLADPEFSFAVDAASVVLQDRESETESSKNPTRRRSKRNRKLGLADPPRFHEQKKIKLDKLSKTESWADPEPVSSISDATTEEDVAFCLMMLSRDKWIEEQENQERRHDEEDEEEAEAEAEEEERFVDETDDSDELKLFKTRARGKYKCETCNKVFRSYQALGGHRASHKKIKACAPIKEVEFEPENASNPCLADAKIHECPVCFRKFTSGQALGGHKRSHISGSAAAAAAPAPPPPPRKASSKVGDSMIDLNLPAPIEEDDISQIEHSAVSDAEFVNPIRR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0546 359 Gene3D Classic Zinc Finger 221 298 - -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 93 156 - -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 183 207 - -
Vvi15g0546 359 SUPERFAMILY beta-beta-alpha zinc fingers 224 298 IPR036236 -
Vvi15g0546 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 303 IPR013087 -
Vvi15g0546 359 SMART c2h2final6 224 246 IPR013087 -
Vvi15g0546 359 SMART c2h2final6 276 298 IPR013087 -
Vvi15g0546 359 SMART c2h2final6 4 26 IPR013087 -
Vvi15g0546 359 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Vvi15g0546 359 Coils Coil 171 198 - -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 118 143 - -
Vvi15g0546 359 Pfam C2H2-type zinc finger 224 248 - -
Vvi15g0546 359 Pfam C2H2-type zinc finger 4 27 - -
Vvi15g0546 359 Pfam C2H2-type zinc finger 276 298 - -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 56 78 - -
Vvi15g0546 359 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Vvi15g0546 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 20 81 - -
Vvi15g0546 359 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vvi15g0546 359 ProSitePatterns Zinc finger C2H2 type domain signature. 278 298 IPR013087 -
Vvi15g0546 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vvi15g0546 359 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 355 IPR044303 GO:0006355
Vvi15g0546 359 MobiDBLite consensus disorder prediction 293 325 - -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 177 209 - -
Vvi15g0546 359 MobiDBLite consensus disorder prediction 338 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0546 Vvi-Chr15 13755848 13756927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0546 1 343 C2H2 Transcription Factor Family AT3G60580 44.986 6.75e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi15g0546 zf-C2H2_6 5.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0546 - - vvi:100242775 645.195