Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0545 ATGGAGGGTCGAGAGAGACTCGCACCACAGTCAATGACCGCCCCAATGCAGCACCACCCTCCGTTATTTGTACAATATTTGACGCGGCGGCGCCACTACCAACCACCACCAATTTGCAAGAAGGGTTTCGGATGCGGGAGGGCTCTCGGCGGGCACATGAGAGCTCATGGTATCGGCGATGAAAGCGGGAACATCGAAGAGGAAGATCCGGCCAGTGATTGGGAAGACAAGCTTGGAGGCCATGTCCTTCCAAGCACCAAGAAAATGTACGCCTTGAGGACAAACCCTAATAGACTTAAGAGCTGCTGCAGAGTTTGTGAAAATTGCGGTAAAGAGTTTTTGTCATGGAAATCTTTTCTCGAGCACGGTAAATGCAACTCCGACGACGCCGAGTCCCTCGTCTCCTCCCCTGGCTCTGACGGCGAGGATGGTTCAGGGAGGAAAGGATATGGGTGGTCCAAGAGAAAACGATCCTTGAGAGCCAAGGTTGGGAACTTCATCTCAAATTGCCCTTCAAGCGAAGAAGAAGACCTCGCACATTGCCTAGTGATGCTGTCCAACGGCACCGTGGATCCCATACTAATGGCGGAGCCGGAAGAGTCGTGTGCTTCAGCTAGTAAGGAGGAGGAGCGGCGGAACCCGATGGGGCTCGCTGCTCCCATGTCATGCCGGCTGCCACTGGAAAAGGCCAAAGGGGTTGTCGGTAAAGGGATGTTCGAGTGTAAGGCTTGCAAGAAAGTGTTCAATTCGCATCAAGCATTGGGTGGACATAGGGCTAGTCACAAGAAGGTAAAGGGTTGCTTCGCAGCGAGGTTAGATCACATGGACGAAAGTCTAGCCGATGAAGATGTGATCACACACGACGAATTCTCAGTGCCCTCGAAATCAACCTCCACTTTTCAATTCGAACACGCCTCAAACGCAGCTCTTTCCTTCCCCTCAAAGAGAAAGTCCAAAGTCCACGAGTGCTCAATATGCCATAGGGTTTTCTCCTCAGGACAAGCGTTGGGCGGGCACAAGAGATGCCATTGGATCACTTCAACTGCTCCAGACACATCTTCACTATCCAAGTTCCACCATTTTCATGATCATTTGGAGCAAATTCAGCAAAGACCCAAGTTGCCCAAAACGACGCCGCTTGATCTCAACCTCCCAGCACCCGTTGACGACATTGCTGGAATCCGAAGGGACCCCAGAAACCCACTCAGCTTTGAGGTGTCTACAGACATCTATTTACGGACATTTCCTAACAATCACAACCACCAAAACGACGCCGGTGGGAACAATAACGACAATGATGTAAACAATATTGATGACAGTAATGGATTAATCCACAGCAATGTGGAAGACGAAGCAGACAGTAAGGTGAAGTTAGCAAAGCTAAGTGACCTAAAAGACATCAACATGAGTGGTGGTTCCTCTCCCTGGTTGCAGGTGGGGATTGGTTCAGCGACCAATGTGGGAGCTGACTCATAA 1476 0.5061 MEGRERLAPQSMTAPMQHHPPLFVQYLTRRRHYQPPPICKKGFGCGRALGGHMRAHGIGDESGNIEEEDPASDWEDKLGGHVLPSTKKMYALRTNPNRLKSCCRVCENCGKEFLSWKSFLEHGKCNSDDAESLVSSPGSDGEDGSGRKGYGWSKRKRSLRAKVGNFISNCPSSEEEDLAHCLVMLSNGTVDPILMAEPEESCASASKEEERRNPMGLAAPMSCRLPLEKAKGVVGKGMFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDHMDESLADEDVITHDEFSVPSKSTSTFQFEHASNAALSFPSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSTAPDTSSLSKFHHFHDHLEQIQQRPKLPKTTPLDLNLPAPVDDIAGIRRDPRNPLSFEVSTDIYLRTFPNNHNHQNDAGGNNNDNDVNNIDDSNGLIHSNVEDEADSKVKLAKLSDLKDINMSGGSSPWLQVGIGSATNVGADS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0545 491 SMART c2h2final6 321 343 IPR013087 -
Vvi15g0545 491 SMART c2h2final6 239 261 IPR013087 -
Vvi15g0545 491 MobiDBLite consensus disorder prediction 56 79 - -
Vvi15g0545 491 Pfam C2H2-type zinc finger 38 56 - -
Vvi15g0545 491 Pfam C2H2-type zinc finger 239 263 - -
Vvi15g0545 491 Pfam C2H2-type zinc finger 320 345 - -
Vvi15g0545 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 321 343 IPR013087 -
Vvi15g0545 491 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Vvi15g0545 491 MobiDBLite consensus disorder prediction 130 152 - -
Vvi15g0545 491 Gene3D Classic Zinc Finger 236 343 - -
Vvi15g0545 491 PANTHER OS02G0659100 PROTEIN 37 488 - -
Vvi15g0545 491 MobiDBLite consensus disorder prediction 415 443 - -
Vvi15g0545 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Vvi15g0545 491 SUPERFAMILY beta-beta-alpha zinc fingers 238 343 IPR036236 -
Vvi15g0545 491 ProSitePatterns Zinc finger C2H2 type domain signature. 323 343 IPR013087 -
Vvi15g0545 491 MobiDBLite consensus disorder prediction 415 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0545 Vvi-Chr15 13742179 13743973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0545 122 384 C2H2 Transcription Factor Family AT1G02040 36.502 1.51e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi15g0545 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0545 - - vvi:100247922 892.493