Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0544 ATGGCTATTCTTCTTCATCCTCACCCATTTTCTCTCCTCATTCTTCTTTCTCTCTTTTCTCTTCTACTAAACCCCTCTTCCTGCTTCCATCTCAAGCTCCTCAACTTCTCCAAGCTTCAATCTGATACTGATTGGTCCCCTGCCGGTGCAACCTGGTATGGACCGGCCAACGGTGCGGGAAGTGATGGTGGAGCTTGTGGATATGAGGATGCAGTAGAGAAGGCTCCATTCTCAGCAAAGGTATCAGCTGGAGGCCCATCTCTATTCAAGTCAGGCAAAGGATGTGGAGCTTGTTATCAGGTGAAGTGCACAGGAAATGAAGCATGCTCAGGGTCTCCGGTGACTGTGACGATAACTGATGAGTGCCCCGGTTGTGTCTCGGAGTCTACTCATTTTGACCTAAGTGGCACTGCCTTTGGAGCCATGGCTAAGTCTGGCCAGGATGATCAACTGCGCAATGCCGGTGTCTTGCAGATACAATATAGAAGGGTTGAGTGCGAGTATCCGGGTACATCAGTGGTCTTTCACGTGGATTCAGGCTCCAACTCAAATTATTTTGCTTCCCTGATTGAATATGAAGACGGAGATGGTGACCTTGCAAGAGTTTATCTGCAACAGGCTCTTGACTCAGACATGTGGGTTCCCATGCAGCAGTCTTGGGGTGCCGTTTGGAAACTTGATTACGGATCCGAGTTACGGGCTCCTTTCTCAATCAAGCTGACTGCACTCGAATCTGGCAATACCCTTGTGGCCAAAAATGTCATTCCAGCGGGATGGCAGCCCGGAAAAACTTATCGATCAGTAGTCAATTTTAATGGCTGA 822 0.4878 MAILLHPHPFSLLILLSLFSLLLNPSSCFHLKLLNFSKLQSDTDWSPAGATWYGPANGAGSDGGACGYEDAVEKAPFSAKVSAGGPSLFKSGKGCGACYQVKCTGNEACSGSPVTVTITDECPGCVSESTHFDLSGTAFGAMAKSGQDDQLRNAGVLQIQYRRVECEYPGTSVVFHVDSGSNSNYFASLIEYEDGDGDLARVYLQQALDSDMWVPMQQSWGAVWKLDYGSELRAPFSIKLTALESGNTLVAKNVIPAGWQPGKTYRSVVNFNG* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0544 273 Pfam Lytic transglycolase 82 161 IPR009009 -
Vvi15g0544 273 SMART dpbb_1 81 161 IPR007112 -
Vvi15g0544 273 CDD DPBB_EXPB_N 45 166 - -
Vvi15g0544 273 PANTHER EXPANSIN-B3 23 271 - -
Vvi15g0544 273 Gene3D - 167 268 IPR036749 -
Vvi15g0544 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 267 IPR007117 -
Vvi15g0544 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 171 IPR007112 -
Vvi15g0544 273 SUPERFAMILY Barwin-like endoglucanases 38 170 IPR036908 -
Vvi15g0544 273 SUPERFAMILY PHL pollen allergen 172 267 IPR036749 -
Vvi15g0544 273 Pfam Expansin C-terminal domain 173 256 IPR007117 -
Vvi15g0544 273 Gene3D - 33 166 IPR036908 -
Vvi15g0544 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Vvi15g0544 273 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vvi15g0544 273 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Vvi15g0544 273 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vvi15g0544 273 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Vvi15g0544 273 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Vvi15g0544 273 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Vvi15g0544 273 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vvi15g0544 273 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Vvi15g0544 273 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Vvi15g0544 273 PRINTS Major pollen allergen Lol pI signature 103 113 IPR005795 GO:0005576|GO:0019953
Vvi15g0544 273 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0544 Vvi-Chr15 13735960 13737451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0544 24 271 Expansin Gene Family AT1G65680 67.470 2.14e-122 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0544 - - vvi:100253046 533.102