Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0533 ATGGACTTGTACGGTCTACAGACGTCCGACTTTTTTCGTATCGATGACCTACTTGACTTTACTAATGACGAACTCTTCTCCTCCACTACCACTGATTCCGGCAATCTCCCTCCGCCGGAGATAGCCTCCGGCAACCGCTCTTTGGCGGCCTCCGGCAACCGCGACCAGCCTAATACTTTTCATTCTGCTGATTTCACTGACGACCTCTGTGTTCCTAGTGATGATGTTGCTGAGCTCGAGTGGCTTTCGAACTTCGTGGACGACTCATTTGCGGATTTTCCGGAGAATGAACTCGCCGGAACCGTAATGGCCCGGCCTGACTCATCATTTCCAGGGCGGACACGTAGTAAGCGGTCCAGAGCATCGTCGACGAACAAAGTATGGACTTCGTTGCCGGTATCTGAGATTCCGATGATCGGGAAATCAAAGACGAATAGCAACAAAAACAGTATTGTAAAGAAAGAAAGCTCATCGTCATCATCTGTGATTAGCGGAGAGAGATCCTCGTCCTCGTCGCCGGCATCGTCGCCCACGGGAGCGCGTAAGTGCACGCACTGCGCTTCGGAGAAAACGCCACAGTGGCGCACGGGTCCTCTAGGTCCAAAAACACTATGCAACGCGTGCGGCGTGCGTTACAAGTCAGGCCGACTGGTTCCGGAGTACCGACCTGCAGCGAGTCCAACGTTTGTGCTGACTCAGCACTCGAACTCGCACCGCAAGGTGATGGAGCTCCGTCGCCAGAAGGAAATCCTCCGGCAACAGCAACAACAACAACAGCTCTACCATCACCACCACGACTTCGAGGTCTGCTGA 813 0.5375 MDLYGLQTSDFFRIDDLLDFTNDELFSSTTTDSGNLPPPEIASGNRSLAASGNRDQPNTFHSADFTDDLCVPSDDVAELEWLSNFVDDSFADFPENELAGTVMARPDSSFPGRTRSKRSRASSTNKVWTSLPVSEIPMIGKSKTNSNKNSIVKKESSSSSSVISGERSSSSSPASSPTGARKCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKEILRQQQQQQQLYHHHHDFEVC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0533 270 MobiDBLite consensus disorder prediction 102 126 - -
Vvi15g0533 270 FunFam GATA transcription factor 170 259 - -
Vvi15g0533 270 CDD ZnF_GATA 182 229 IPR000679 GO:0006355|GO:0043565
Vvi15g0533 270 PANTHER GATA TRANSCRIPTION FACTOR 9 257 - -
Vvi15g0533 270 ProSitePatterns GATA-type zinc finger domain. 183 208 IPR000679 GO:0006355|GO:0043565
Vvi15g0533 270 ProSiteProfiles GATA-type zinc finger domain profile. 177 213 IPR000679 GO:0006355|GO:0043565
Vvi15g0533 270 MobiDBLite consensus disorder prediction 138 197 - -
Vvi15g0533 270 Pfam GATA zinc finger 183 216 IPR000679 GO:0006355|GO:0043565
Vvi15g0533 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 241 - -
Vvi15g0533 270 MobiDBLite consensus disorder prediction 139 182 - -
Vvi15g0533 270 MobiDBLite consensus disorder prediction 28 57 - -
Vvi15g0533 270 Gene3D - 179 263 IPR013088 GO:0006355|GO:0008270
Vvi15g0533 270 SMART GATA_3 177 227 IPR000679 GO:0006355|GO:0043565
Vvi15g0533 270 PIRSF Txn_fac_GATA_plant 2 269 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0533 Vvi-Chr15 13505714 13506652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0533 1 258 C2C2-Gata Transcription Factor Family AT2G45050 54.307 1.53e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi15g0533 GATA 1.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0533 - - vvi:100244467 485.337