Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0530 ATGTTTCAGTGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTCAATTGTTCGTGTTACGAGGCCCACACGACCTGACAAGGCTCGCCGTCTGGGGTATAAAGCAAAGCAGGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCCAGCTGAAGTTCCAACGTAGCAAGAGGTCAGTTGCTGAAGAACGTGCTGGTCGGAAATTAGGTGGTCTGAAAGTTCTCAACTCGTACTGGATAAACGAGGATTCTACATACAAATACTATGAGATAATCCTAGTTGATGCTGCCCATAATGCAATTCGAAATGATCCAAGGATCAACTGGATCTGCAAGCCTGTGCACAAACACAGGGAGCTTCGCGGTCTCACATCTGCAGGAAAGAAATACAGAGGACTCCGTGGAAAGGGTCACCGGCACCACAAAGCACGCCCTTCTCGCAGGGCCACTTGGAAAAGGAACAACACGCTCTCCCTTCGTCGGTATCGTTGA 621 0.4911 MFQWAYMYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYYEIILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHRHHKARPSRRATWKRNNTLSLRRYR* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0530 206 Pfam Ribosomal L15 5 192 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vvi15g0530 206 MobiDBLite consensus disorder prediction 172 192 - -
Vvi15g0530 206 Gene3D Ribosomal protein l15e 4 206 IPR024794 GO:0003735|GO:0005840
Vvi15g0530 206 FunFam Ribosomal protein L15 3 206 - -
Vvi15g0530 206 ProSitePatterns Ribosomal protein L15e signature. 48 71 IPR020925 GO:0003735|GO:0005840|GO:0006412
Vvi15g0530 206 PANTHER RIBOSOMAL PROTEIN L15 5 206 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vvi15g0530 206 SMART Ribosomal_L15e_2 4 195 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vvi15g0530 206 MobiDBLite consensus disorder prediction 174 192 - -
Vvi15g0530 206 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 5 197 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0530 Vvi-Chr15 13466078 13469473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0530 5 206 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.594 1.76e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0530 K02877 - vvi:100246159 409.453