Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0527 ATGGCTCCCTCCGCACGGTCTCCGGCAATTCGCCTGCTATACACCCTCTCCTCCGCCCTCAAAACGACGTCGTCGCCTCTTCTGACTGGTCACCGGCGGACTTTCTCAGCCGGCAACCCAGCGAGAGTGGAGGCAACATGGTGGAAGGAGTCAATGGAGAGGCTTCGGAACATCGGAATCTCTGCCCACATCGATTCGGGGAAGACGACGCTGACGGAGAGGATTCTGTATTATACGGGAAGGATCCATGAGATTCATGAGGTTAGAGGCCGCGATGGAGTAGGTGCGAAGATGGATTCCATGGATTTAGAAAGAGAGAAGGGGATCACGATTCAGTCTGCTGCTACCTACTGTACTTGGAAAGATTATCAGGTTAACATAATTGACACTCCTGGTCATGTCGACTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTCCTTTGTAGTGTTGGTGGTGTGCAGAGTCAGTCAATAACTGTTGATAGGCAAATGAGAAGATATGATGTCCCAAGAGTTGCATTCATTAACAAACTTGATCGAATGGGAGCAGATCCATGGAAAGTTCTCAGCCAGGCAAGGTCAAAGCTCCGGCATCACAGTGCTGCTGTGCAAGTTCCAATTGGGTTGGAAGATGATTTTCAGGGTCTTGTTGATCTTGTGCAGTTAAAAGCTTACTATTTTCATGGTTCCAATGGTGAAAAAGTTGTGGCCGAAGAAATACCTGCCAATATGGAGGCATTAGTTGCAGAAAAGCGGCGTGAACTCATAGAAATGGTTTCCGAGGTTGATGATAAACTAGCCGAAGCATTTCTAACAGATGAACCTATATCATCTGCTAGTCTTGAGGAGGCAATCCGCAGGGCTACAGTTGCACAGAAATTTATACCGGTCTTCATGGGCAGTGCATTCAAAAACAAGGGAGTGCAACCCCTTCTTGATGGTGTGCTTAGTTATTTGCCTTGTCCTACTGAAGTTAGCAACTATGCTCTTGACCAAAACAAGAATGAAGAGAAGGTGACTATATCTGGAACTCCGGTTGGACCTCTTGTCGCATTGGCTTTTAAATTGGAAGAAGGGCGCTTTGGTCAATTGACATACCTAAGAATCTACGAGGGTGTCATTCGGAAGGGTGATTTTATAATCAATGTAAACACAGGCAAAAAGATAAAGGTTCCTCGCTTGGTTCGGATGCATTCTAATGAGATGGAGGACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGGTGATACTTTTACTGATGGGTCAGTGAGATACACCATGACCTCTATGAATGTTCCAGAACCGGTCATGTCATTAGCTATTTCACCCGTTTCTAAGGATTCTGGAGGACAATTTTCAAAGGCTTTGAATCGCTTTCAGAGAGAGGATCCTACTTTCCGTGTTGGGTTGGACGCTGAGAGTGGGCAGACAATTATTTCTGGAATGGGAGAGCTGCATTTGGACATTTACGTTGAACGCATTCGGAGGGAGTATAAGGTTGATGCAACTGTTGGAAGACCTCGTGTTAACTTCAGAGAGACTGTTACGAAACGTGCTGAATTTGATTACTTACATAAGAAGCAAACTGGAGGACAAGGTCAATATGGAAGGGTCTGTGGGTATGTAGAACCACTCCCAGAAGGATCCACCACTAAGTTTGAATTTGAGAACATGATTGTAGGACAAGCTGTACCATCCAATTTTATCCCAGCCATTGAGAAGGGTTTTAAAGAAGCAGCCAATTCGGGTTCACTGATAGGGCATCCAGTTGAAAATATTCGTATCGTTTTAACAGACGGTGCTGCCCATGCTGTGGATTCTAGTGAACTTGCATTTAAGTTAGCTGCAATTTATGCTTTTAGACAGTGCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAGAGGAAAGGTGTGATCGTTGGAAATGACCAGGATGGAGACGATTCTGTAATTACTGCCCATGTCCCTCTAAACAATATGTTTGGGTACTCAACATCACTTCGTTCAATGACTCAGGGGAAAGGTGAATTCACAATGGAATACAAAGAGCATTCACCGGTTTCTCAAGATGTGCAGCTGCAATTAGTGAACACCTACAAGGCCAATAAGGCAGCTGAAAATAGTTAG 2241 0.4507 MAPSARSPAIRLLYTLSSALKTTSSPLLTGHRRTFSAGNPARVEATWWKESMERLRNIGISAHIDSGKTTLTERILYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYDVPRVAFINKLDRMGADPWKVLSQARSKLRHHSAAVQVPIGLEDDFQGLVDLVQLKAYYFHGSNGEKVVAEEIPANMEALVAEKRRELIEMVSEVDDKLAEAFLTDEPISSASLEEAIRRATVAQKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQNKNEEKVTISGTPVGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAISPVSKDSGGQFSKALNRFQREDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGRPRVNFRETVTKRAEFDYLHKKQTGGQGQYGRVCGYVEPLPEGSTTKFEFENMIVGQAVPSNFIPAIEKGFKEAANSGSLIGHPVENIRIVLTDGAAHAVDSSELAFKLAAIYAFRQCYTAAKPVILEPVMLVELKAPTEFQGTVTGDINKRKGVIVGNDQDGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSQDVQLQLVNTYKANKAAENS* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0527 746 CDD mtEFG1_C 649 726 IPR035649 -
Vvi15g0527 746 FunFam Elongation factor G, mitochondrial 46 333 - -
Vvi15g0527 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 327 IPR027417 -
Vvi15g0527 746 CDD EF-G 57 329 - -
Vvi15g0527 746 NCBIfam elongation factor G 51 736 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vvi15g0527 746 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 330 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 SUPERFAMILY Translation proteins 294 446 IPR009000 -
Vvi15g0527 746 SMART EFG_C_a 646 733 IPR000640 -
Vvi15g0527 746 Gene3D Translation factors 337 454 - -
Vvi15g0527 746 CDD EFG_III 449 524 IPR009022 -
Vvi15g0527 746 NCBIfam small GTP-binding protein domain 55 227 IPR005225 GO:0005525
Vvi15g0527 746 Gene3D - 529 733 IPR014721 -
Vvi15g0527 746 Pfam Elongation Factor G, domain III 448 521 IPR041095 -
Vvi15g0527 746 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 PRINTS GTP-binding elongation factor signature 106 114 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 PRINTS GTP-binding elongation factor signature 142 153 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 PRINTS GTP-binding elongation factor signature 126 136 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 SMART EFG_IV_2 524 644 IPR005517 GO:0005525
Vvi15g0527 746 CDD EFG_mtEFG1_IV 527 644 IPR005517 GO:0005525
Vvi15g0527 746 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 99 114 IPR031157 -
Vvi15g0527 746 Gene3D - 650 720 - -
Vvi15g0527 746 SUPERFAMILY EF-G C-terminal domain-like 446 523 IPR035647 -
Vvi15g0527 746 Pfam Elongation factor Tu domain 2 369 435 IPR004161 GO:0005525
Vvi15g0527 746 Hamap Elongation factor G [fusA]. 51 737 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vvi15g0527 746 SUPERFAMILY Ribosomal protein S5 domain 2-like 523 645 IPR020568 -
Vvi15g0527 746 CDD mtEFG1_II_like 356 436 - -
Vvi15g0527 746 Pfam Elongation factor G, domain IV 523 643 IPR005517 GO:0005525
Vvi15g0527 746 Gene3D - 46 332 IPR027417 -
Vvi15g0527 746 SUPERFAMILY EF-G C-terminal domain-like 649 741 IPR035647 -
Vvi15g0527 746 Pfam Elongation factor G C-terminus 647 731 IPR000640 -
Vvi15g0527 746 FunFam Elongation factor G 529 662 - -
Vvi15g0527 746 Pfam Elongation factor Tu GTP binding domain 54 327 IPR000795 GO:0003924|GO:0005525
Vvi15g0527 746 FunFam Elongation factor G 452 528 - -
Vvi15g0527 746 FunFam Elongation factor G 650 720 - -
Vvi15g0527 746 FunFam Elongation factor G, mitochondrial 338 451 - -
Vvi15g0527 746 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 31 736 - -
Vvi15g0527 746 Gene3D Elongation Factor G (Translational Gtpase), domain 3 455 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0527 Vvi-Chr15 13435910 13452407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0527 55 713 Eukaryotic Initiation Factors Gene Family AT1G56070 24.311 3.44e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0527 K02355 - vvi:100265034 1472.6