Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0524 ATGCATTGTATCAAGGTCTCTTCTTTACTAAGATTAGGCTCTGAATTACTTAATCTCACCGAGGAATTATTCAGCCCTACATCTCTCCGATCATATTTTGCCGAGTTTATCTCTACATTCATCTTCGTTTTCCTCGGAGTCGGCTCTGCAATGTCAGCCGATGCCACCTCAGCTGAAACCGGTGTTCTGGCTGTTGCCGTGGCACACGCTTTTGCATTGGTTGTTGCTATGTATTTGGCCGGAGATATATCTGATGGCCATGTCAATCCAGCTGTCACATATGGATTGGTTGTTGGAGGCCATGTCAGCGGGTTGACTGGCATATGTTATTGCATGGCTCAATTATCGGGGTCCGTTACTGCATGCGTGGCGTTAATATTGGCGATTCCTACTACAAGGCCGGATCCCAAAATATCGGGTTTAGCTGACGTGGCGATCGAGGCCTTGGCCACGTTTGCAATCGTGTATGCGGTGTATGTAGCACGAGACCTAAGGAACGGGTCACGTGGAATCATGGGACCAATAGCGGTCGGGTTTATATACGGGGCGAATATATTGGTGACAGCACCGTTAACGGGCGGGTCAATGAATCCAGCCCGATCATTTGGACCGGCATTTGTAACGGGTGATATGAAGAAGCAGTGGGTTTACTGGGTCGGACCCCTGGTTGGAGGGGGCATTGCAGGTTTGGTGTATGAGAGCTTGATGACAACATCAAATGGCCAGCCTCCTTCTTCTATTAGTAGTGTGGGCTAG 756 0.4907 MHCIKVSSLLRLGSELLNLTEELFSPTSLRSYFAEFISTFIFVFLGVGSAMSADATSAETGVLAVAVAHAFALVVAMYLAGDISDGHVNPAVTYGLVVGGHVSGLTGICYCMAQLSGSVTACVALILAIPTTRPDPKISGLADVAIEALATFAIVYAVYVARDLRNGSRGIMGPIAVGFIYGANILVTAPLTGGSMNPARSFGPAFVTGDMKKQWVYWVGPLVGGGIAGLVYESLMTTSNGQPPSSISSVG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0524 251 SUPERFAMILY Aquaporin-like 22 239 IPR023271 -
Vvi15g0524 251 PANTHER AQUAPORIN-8 20 238 IPR034294 -
Vvi15g0524 251 Pfam Major intrinsic protein 25 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 Gene3D Glycerol uptake facilitator protein. 14 246 IPR023271 -
Vvi15g0524 251 CDD MIP 30 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 PRINTS Major intrinsic protein family signature 106 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi15g0524 251 FunFam Probable aquaporin TIP5-1 14 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0524 Vvi-Chr15 13417086 13418212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0524 21 244 Major Intrinsic Protein MIP AT3G16240 50.213 9.14e-72 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0524 K09873 - vvi:100247890 464.536