Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0515 ATGCTGGACTACGAATGGGGGAACCCATCTCCGATCATGCTCTCCGGAGACGAGCCCCCTCAGGATTCGGACCAGACCCGCCAGATATTCGACCACTACCACCAAACCTTCACCGACGGACTCGTCGCTCCGGCGACCGCCTTCTTCCACCACCAGAGCCAGCCTCAGCCCGCTCATATTCACTCCCTCTACGACCCACGCGCCTACCACACGTACCAGGCCCCCCCGCCGGCGATGCTGTCGCTTGAGCCGGTGGCCGGGACGTCCGCCGGCGGGGGGACCGGGTTTATGGTGGTGCCGAAGAGCGAGGAGATGGTGCCGGCGGCGGATTTCACGGCGAGAATTGGGCTGAATTTGGGGGGCAGAACGTATTTCTCCTCCGAGGACGACTTCGTGAACCGGCTGTACCAGAGGCGGTCGAGACCGGCGGAACCCGGTTTGACGAACTCGCCGAGGTGTCAAGCCGAGGGCTGTAATGCCGATCTCACCCACGCCAAGCATTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCTACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGATTCCATCTTCTCTCGGAATTCGACAACGGAAAGCGCAGTTGCCGGAAAAGATTGGCCGATCACAACCGCCGCCGCCGAAAGTCGCAGCAACCCATTCAAGATAACCACAAGCTGCACCAGCACCACCTCGAAAATGCCCGGAATTCATCTTCCGACAACATCACTAGGTCGCCGCCAGATTCCGGAGCTCACTCGTCGTCGTCGGTGACGGTGGCGGTGTCGCCGCCGCGGATGACGTTGGATTGCTTCCGGCAAAGGCCGTACCAAACGACGGCGTCATCGGCATCGTCAAGCTCACTGTTTTTCCCGAGTGGGTGA 915 0.6098 MLDYEWGNPSPIMLSGDEPPQDSDQTRQIFDHYHQTFTDGLVAPATAFFHHQSQPQPAHIHSLYDPRAYHTYQAPPPAMLSLEPVAGTSAGGGTGFMVVPKSEEMVPAADFTARIGLNLGGRTYFSSEDDFVNRLYQRRSRPAEPGLTNSPRCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVFAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQPIQDNHKLHQHHLENARNSSSDNITRSPPDSGAHSSSSVTVAVSPPRMTLDCFRQRPYQTTASSASSSSLFFPSG* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0515 304 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 296 IPR044817 GO:0003677
Vvi15g0515 304 MobiDBLite consensus disorder prediction 243 271 - -
Vvi15g0515 304 SUPERFAMILY SBT domain 151 230 IPR036893 GO:0003677|GO:0005634
Vvi15g0515 304 MobiDBLite consensus disorder prediction 246 271 - -
Vvi15g0515 304 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Vvi15g0515 304 Gene3D - 146 214 IPR036893 GO:0003677|GO:0005634
Vvi15g0515 304 Pfam SBP domain 153 226 IPR004333 GO:0003677
Vvi15g0515 304 MobiDBLite consensus disorder prediction 1 24 - -
Vvi15g0515 304 FunFam Squamosa promoter-binding-like protein 14 145 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0515 Vvi-Chr15 13257171 13258563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0515 1 200 SBP-box Gene Family AT1G02065 49.796 5.41e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi15g0515 SBP 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0515 - - vvi:100266738 593.964