Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0514 ATGGAAAATGGCGGGAACTCGTTTAACGGTAATAGAGGGCAGAATGGTAATAGTGGCAGCCACCTTGCATGGGATGTTCGAGACCTTGGGGCCTCCAGGTTTGACTGGAACTGCACCGGCAATTCTTTCAACGACGACGCCGCCACCGCCACTGCCACCGACGCTCCCACCCAGCCGGAGGCCGGCGTGGGTCACGCCCTGATGTTCCCTCACCAGGCCACTGCTGATGTGCACCACAACCAGTACTATCACCAACACAACCACCACCACCACCACCAGCAGTCGCTCTATGGCGGCGATGGGTCTCATCTCCACCCAGACCCACACTTGATGTGCTTGAAGCTCGGGAAGAGGCACTATTTCGAGGACTCCACGCCTGGGATCTCCACAGACAAGAGGGGTCGACCCTATTATAGTGGAGGATCGTCGCAGTCGTCGGCGACGGCTGTTTCGGTGGTGGGGTCCCCGGCGACGGTGCCGAGATGCCAGGTGGAGGGTTGCCACGTGGCGCTGGTCAATGCCAAGGACTACCACCGGAGGCATAAGGTGTGTGAGATGCATTCAAAGGCACCTAAAGTGGTAGTTCTTGGTTTAGAGCAGCGGTTTTGTCAACAGTGTAGTAGGTTTCATGCAGTGTCAGAGTTCGACGACTCAAAGAGGAGCTGCAGGAGGAGATTAGCAGGGCACAATGAGCGAAGAAGAAAGAGCTCTCATGATTCTGTTGCCAGGAACCCTTCTCAAGCAGCTAATAAATTGATGACTGGGAGATTCGCATACTTATCATCGCCGACAGGACGTGCTCTCTCTCTTCTGTCATCGAAGTCGGATTCTTGGGTTTCCTCAGCAGAACTCTCCTTAAGATCCAGTGCAGCACTCCGTGAGCTGATCGCCGAAAATCGTGCAGCCATCCTAGCTAGACAGCTTATCCTAGACCGGGACTGGCATTGGCATCACCATGGGATGGAGGATTCAGGTGGGGAGCAACCAGGATCCGATTCCCTCATGCCCCACCAGCACCAAATGTTCCCTGGGTCACGCAGCTGGGAGCGGTTCCATGAAGCCAATGGACACGTAACACTCGACCTCATGCAGGCTCCTAGCTCAGCATTTGGGTTATTGTCTGTGAGGGAGAAGTCCAAGGAAGAAGAAGAAGAATGTTCAGAGTTGTGGAACTCCCTGGAAGGAACTCATGTTGTTTGA 1200 0.5467 MENGGNSFNGNRGQNGNSGSHLAWDVRDLGASRFDWNCTGNSFNDDAATATATDAPTQPEAGVGHALMFPHQATADVHHNQYYHQHNHHHHHQQSLYGGDGSHLHPDPHLMCLKLGKRHYFEDSTPGISTDKRGRPYYSGGSSQSSATAVSVVGSPATVPRCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHAVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNPSQAANKLMTGRFAYLSSPTGRALSLLSSKSDSWVSSAELSLRSSAALRELIAENRAAILARQLILDRDWHWHHHGMEDSGGEQPGSDSLMPHQHQMFPGSRSWERFHEANGHVTLDLMQAPSSAFGLLSVREKSKEEEEECSELWNSLEGTHVV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0514 399 SUPERFAMILY SBT domain 160 241 IPR036893 GO:0003677|GO:0005634
Vvi15g0514 399 FunFam Squamosa promoter-binding-like protein 14 153 223 - -
Vvi15g0514 399 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 367 IPR044817 GO:0003677
Vvi15g0514 399 MobiDBLite consensus disorder prediction 226 247 - -
Vvi15g0514 399 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Vvi15g0514 399 MobiDBLite consensus disorder prediction 124 146 - -
Vvi15g0514 399 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Vvi15g0514 399 Pfam SBP domain 162 235 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0514 Vvi-Chr15 13245041 13249066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0514 111 235 SBP-box Gene Family AT1G27370 55.200 5.45e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi15g0514 SBP 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0514 - - vvi:100246212 706.827