Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0510 ATGGGTCGGTCGAGGTTGCCATTGGAGCTCATTCCTAAGGAAAAGTCTCGAAAAATTACCTTCCAAAAGAGAACGATGGGATTGAAGAAGAAAACATATGAAATATCAACTCTTTGTGGGGTTGATGCTTGTGTAATCATCTATAATTGGACGTCAGATGATCGCCCTATGGAACCGATATTTTGGCCTTCAAATCCTGAGGAGGTGAAATCCATTATCAATAGGTACAAAGAACATAGCAAGGAGGAGAGAGGGTTGAAAACCCTAGATTTATCAGGCTTTTTCGAGGAAAGGACTAAGAAGATCCAGAAAGAGATTTCAAAATTAGGCCACCAAGGTGCAGATCAGACTAAATACCCCACATGGGACGACCGACTAAATGATCTATCAACAGATCAACTTAGGGAACTCGTGAATGCATTGGGCAACAAGCTTGAAGTCATCAAGTCTAGGGTTGAGTTATTGAAGATGAGTCAAGCTCTGTTAGAAGGGCCTGCATCGGTAAACCCTAGTTATCCTAATAATGCAATGCCATCAACACAGAGCTTGCATGTTCCTTATATGGGCGCGATTGACTCAATGCCGTTAGTACCAAACCCTATGACTCCTATGATGAATCCAAGAATGACTAAGGTGATGATGGCAATGATGACAAACGACAACACTAATAGTTCTCAATTCAGTGGCCCATCCAACTGCACTAACAACACTCAGTATACTCCACCATTGCAACACCCATTTTACTATGATCCCACGTCAGGACTTTTGGAGAATATAGTGTACAGCAATCCTGGACCATCATCGTGCTACTACCCGCCTGCCATGCTGCCACCAATACTTCCATACATCCCGAATCAAATGATAACAAATGTTCCTCAAATAGCCAGAGATTATGATATGAATGAATTGGATGTAAATGATAACAAGCAAGGTATTAGATATGGATGA 948 0.4167 MGRSRLPLELIPKEKSRKITFQKRTMGLKKKTYEISTLCGVDACVIIYNWTSDDRPMEPIFWPSNPEEVKSIINRYKEHSKEERGLKTLDLSGFFEERTKKIQKEISKLGHQGADQTKYPTWDDRLNDLSTDQLRELVNALGNKLEVIKSRVELLKMSQALLEGPASVNPSYPNNAMPSTQSLHVPYMGAIDSMPLVPNPMTPMMNPRMTKVMMAMMTNDNTNSSQFSGPSNCTNNTQYTPPLQHPFYYDPTSGLLENIVYSNPGPSSCYYPPAMLPPILPYIPNQMITNVPQIARDYDMNELDVNDNKQGIRYG* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0510 315 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vvi15g0510 315 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Vvi15g0510 315 PANTHER MADS BOX PROTEIN 10 153 - -
Vvi15g0510 315 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g0510 315 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g0510 315 SUPERFAMILY SRF-like 2 100 IPR036879 GO:0003677|GO:0046983
Vvi15g0510 315 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi15g0510 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Vvi15g0510 315 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0510 Vvi-Chr15 13193733 13194680 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0510 1 151 Type I MADS-box Gene Family AT5G55690 34.641 1.51e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0510 SRF-TF 3.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0510 - - vvi:104881824 587.415