Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0507 ATGGGTCGATCGAGGTTGCCATTGGAGCTCATTCCTAAAGAAAAGTCTCGAAAAATTACCTTCCAAAAGAGAACGATGGGATTGAAGAAGAAAACATATGAAATATCAACTCTTTGTGGGGTTGATGCATGTGTAATCATCTATAGTTGGACGTCAGATGATCGCCCTATGGAGCCAATATTTTGGCCTTCAAATCCTGAGGAGGTGAAATCCATTATCAATAGGTACAAAGAACATAGCAAGGAGGAAAGAGGGTTGAAAACCCTAGATTTATCAGGCTTTTTCGAGGAAAGGATTAAGAAGATCCAGAAAGATATTTCAAAATTAGGTCACCAAGGTGCAGACCAGACTAAATACTCCACATGGGACGACCGATTGAATGATCTATCAGTGGATCAACTTAGGGAATTCGTGAATGCATTGGGCACTAAGCTTGAAGTCATCAAGTCTAGGGTTGAGTTACTGAAGATGAGTCAAACTCTCTTAGAAGGGCCTGCATTGGAAAACCCTAGTTATCCTAACAATGCAATGCCATCAACACAGAGCTTGCATGTTCCCTATCTAGGCATGATTGACTCAATGTCGTTAGTACCAAACCCTATGACTCCTATGATGAATCCAAGAATGACTAAGGTGATGATGACAAGCGACAACACTAATAGTTCTCAATTCAGTGGCCCATCTAACGGCACTAACAACACTCAATATACTCCGCCATTGCAACACCCATTTTACTATGATCCCACATCGGGACTTTTGGAGAATATAGTGTCCAGCAATCCTGGACCATCATCGTGCTACTACCCGCCTGCCATGCTACCACCAATACTTCCATACATCCCGAATCAAATGATGATGAATGTTCCTCAAATAGCCAGAGATTATACACCTATTGCATAA 900 0.4167 MGRSRLPLELIPKEKSRKITFQKRTMGLKKKTYEISTLCGVDACVIIYSWTSDDRPMEPIFWPSNPEEVKSIINRYKEHSKEERGLKTLDLSGFFEERIKKIQKDISKLGHQGADQTKYSTWDDRLNDLSVDQLREFVNALGTKLEVIKSRVELLKMSQTLLEGPALENPSYPNNAMPSTQSLHVPYLGMIDSMSLVPNPMTPMMNPRMTKVMMTSDNTNSSQFSGPSNGTNNTQYTPPLQHPFYYDPTSGLLENIVSSNPGPSSCYYPPAMLPPILPYIPNQMMMNVPQIARDYTPIA* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0507 299 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vvi15g0507 299 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi15g0507 299 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi15g0507 299 SUPERFAMILY SRF-like 2 101 IPR036879 GO:0003677|GO:0046983
Vvi15g0507 299 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Vvi15g0507 299 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Vvi15g0507 299 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi15g0507 299 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Vvi15g0507 299 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0507 Vvi-Chr15 13159995 13160894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0507 1 151 Type I MADS-box Gene Family AT5G55690 33.987 1.00e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi15g0507 SRF-TF 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0507 - - vvi:104881825 556.599